GgaINT0021953 @ galGal4
Intron Retention
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18437308-18437956:+
Coord C1 exon
chr12:18437308-18437449
Coord A exon
chr12:18437450-18437797
Coord C2 exon
chr12:18437798-18437956
Length
348 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
GGGTTTTAATAAATCCATAGATT
3' ss Score
5.14
Exon sequences
Seq C1 exon
ATCTGTTACCAAATTGTTGGAGGATTTGGTCTACTTTGTTACTGGTGGAACTAATTCTGGGCAAGACGTCCTTGAAGTGGTATTTTCTAAACCTAATAGAGAACGGCAAAAACTGATGAGAGAACAGAATATTCTAAAGCAG
Seq A exon
GTAGACTGCATTTTTCTCTAAACTATGCCTACAAGAAGGGTTGTTGGAAAGGAGATCCTAGTAGTAGAGAACCTGGTCAAAATGGTGGGACCAAAGGATCCGTTGAGTTTTTAGCTTTTGGCAGCTTGGCAGTGGACTCTGGGCATAGTATTGCTAGAAGAAAAGATTATAGAATATAGTGCTGATCTTGGCTACTCTGTGGCCAAGGAACAAACACTGCAACTACAGTGTGTTTCTGACATACCTTTTTGAAATTCGTAAATGCTAACACAGTACCTTTACGTTAATTTTAATCAAATGGAGGCAGTGCCTCATGGGATTTATGTTTGGGTTTTAATAAATCCATAG
Seq C2 exon
ATTTTCAAGTTGTTGCAAGCACCATTTACAGACAGCGGCGATGGCCCCATGCTGCGGTTGGAGGAGCTCGGAGACCAACGTCACGCTCCATTCAGACACATATGCCGGCTCTGCTACAGGGTGCTGAGGCATTCTCAGCAGGATTACAGGAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013506:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGAGGATTTGGTCTACTTTGT
R:
TGATTCTTCCTGTAATCCTGCTGA
Band lengths:
286-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]