RnoINT0076628 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140411396-140413665:+
Coord C1 exon
chr4:140411396-140411537
Coord A exon
chr4:140411538-140413506
Coord C2 exon
chr4:140413507-140413665
Length
1969 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTCTTTCTTTTTACAAACAGATC
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTGTCACCAAGCTGCTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACGAACTCTGGCCAAGACGTGCTTGAAGTAGTCTTCTCTAAGCCCAACCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
Seq A exon
GTCAGTGAGCCTTGATGTGCTTTGGCGTGGGCTCTGTAAGAAGCCTGTGGGATCCCAGCTCGTACAAAGAGACATGGATGGTTCTCAACCCGAAAACTTACAGTTTGGTTTTTATTTAAAGTACTGACTTCTTAGAGTAGTTTTAAGTGTGTAGCAAATGTAAGTGGCAGGATAGTGTCCTGCGTCCTTTGCCCCAGGGTCAACATTCTGCAGCAGAATGGAGCATTTGTTGCAGGAGTGACCATAGATCAATACGTCACTATTACTCAAGGTCCCTATTTTATGGAGGTGTATGTGATTTGGTTTTGACAGGTATATAATGGCCTGCATGCACCATCACAATATCATTGCCTAAAAATCCAAAAATCTCTGCCCCCAGATTCTTTGCTTCACCCACTCACTCATCCATCGTTCTTCACCATGCCTTACAACTACTCCTCTTTTCAGTGTTCTGCCTTGTTCGGACTGCCGTATTGGTGGCATTATGTAGCTTGCAGCCTTTTCAGATCTGCAAGGCTCTCCATGTCTTCTCACAGCTCAATGCAGGTGGGGAACCTGTGGTCTGCTAATCCCTGCATGGAGGAAGCAGAGAAGCGCTTGCTCCTGTGGCCATGCCTCTACTACGTAACCCATTCGGCTATGAGTCTGTGGTGGCTAGGACTCACATCTCAACACTGCCGTCTCAGAAACCAGACTTTTACCATGAGCTTTTAGAGACCTTTAAGATTCTGAGTATGGACAGTGTTAACTTCAGTAAGTGGACAACTTAGAGGGAGAAGCATGACAAATCCAGGTGGAGGACGCACTCTGAGCATGCACCATGTACTTCTGTGTAAAGCTGTGGGAGGCTTGCTTAGTTATTCCTTGGAACTTCCTGGTGACCAAAATGACAAGAGAGACGAGTTCCCATGAGAATTTGGCATGTGGAAATCCTTCTTCCTGTTGGGGCTGTGATAGACGAAATTCATATTTCAACAAGGTTTGAAGTCCAAGAATGAATTACACCCAGATGTTTCATGTGTTGAAAGCCAGATTAGAATTCTTGCTTATTGTCCTTGTTCATCCCCACAATAGCCATCCCTTGAGGGGTTCAAGCGGTGTTGGTCACTCTAATATGGAGCTGTACTTCCGTTTGCAACTGCTATCTGTTTAATCCTCAGAGAACTTACGGATGTTAGATAGTGTGTTTTGTCTTCTCCCATTGAGAGGACATGTTTACTTTGGACACGGTCCGCACTGTTACCCAGTGTTCCTGAGATCCAGTTCATCTGCTTGATAGCAAACAATCACATTCATTTTGGTCTTACTAGGATTGTAGTCCAGGAGGCATCAAATCCAGCAGCCCTCTGAGAGCACTGTCAACTTTTCCAAGATGATAGCTGTTTTTATAGCTTAATCCACAAGCAGGCTGGCTGATTACATCCTGTTCGTGAAGACTTGTGGTCGGTGTGGCCAAGGTCACATTGCCTTATAGGAAAAGGGTTGAATAGTCTCATGAAACTCAGCAGATAGTTCTCAAACTGTTACAAAACCAACCGAATCTCCTCCCGAGGGTTACAGGTCAGCTCGGTGTTTGAGGTCAGCCTACACCTGTGTGTGCTTGCAAAGACAGCTGAGTTCAAAAGGTGAACTGTGGACATGTTTGACACCTTAACAAGTCCTCACAACTTCAGTTTCAGTGCCCGGATCAATGCTAATCTGATTTTTGTCCCTGCTAGAAGTCATAATTTCAACCTAAATCCTTCCCTGCATGCTGCTAAAAAATGCTGCCATTTGTCTGGGCACCGATAAACAAGTGGGTGCCCAATTCAGCTGACTGACAGATTCAGGTGTCCGTTTCCTGATCCGTTTGGATAGAAAAACCTTTTCATTGAATCCTGCTACCTCTCTAGGTGTGGCCCTTCCTGGAAAGAGAGTTAGAGTTTAAAACACACAGTGATGGCTGCCCGCTCTTTCTTTTTACAAACAG
Seq C2 exon
ATCTTCAAGCTTTTGCAGGCCCCCTTCACGGACTGCGGGGATGGCCCAATGCTTCGGCTGGAGGAGCTGGGGGACCAGCGGCACGCTCCTTTCAGACACATTTGCCGACTCTGCTACAGGGTCCTGAGACACTCACAGCAAGACTACAGGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAGCTGCTGGAAGACTT
R:
TGGTTCTTCCTGTAGTCTTGCTG
Band lengths:
294-2263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]