GgaINT0141516 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4460760-4461290:-
Coord C1 exon
chr26:4461149-4461290
Coord A exon
chr26:4460922-4461148
Coord C2 exon
chr26:4460760-4460921
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATCTCTGCTTTTGGACAGATC
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTTTGTGATCCAGCTGCTGGAGGACTTGGTGTTCTTCGTCAGCGATGTCCCAAACAACGGCCAGAATGTGCTGGACATTGTGGTCACCAAACCCAACCGGGAGAGGCAGAAGCTCATGAGGGAGCAGAACATCCTGAAGCAG
Seq A exon
GTGAGTGGTGCTGGGGCTGTGCACCCAAGCAAGGCTGAGGTCCTCAGCGGCCCCCTGCCCTGCCCTGGACCATGATGGAGGCTGGGTCTCCAAAAAAGCCCATGGAGGAAGTGGCACTCGTCTCCAGTTCACACCCTTGTGTTGCACCAAGCCCTCTTGGGAAGGCAGTGGGAAGGCATGGAAGGCAGTGTGGAAGGCATGCAGCACTTATCTCTGCTTTTGGACAG
Seq C2 exon
ATCTTTGGGATCCTGAAAGCCCCCTTCAAGGACAAAGGTGGGGAGGGGCCCCTGGTGCGGCTGGAGGAGCTGTCAGACCAGAAGAATGCTCCCTACCAGTACATGTTCCGACTGTGCTACCGTGTGCTCCGGCACTCCCAGGAAGACTATCGCAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.2=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCTGGAGGACTTGGT
R:
GGTTCTTGCGATAGTCTTCCTGG
Band lengths:
292-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]