RnoINT0076732 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5680835-5681834:+
Coord C1 exon
chr20:5680835-5680976
Coord A exon
chr20:5680977-5681672
Coord C2 exon
chr20:5681673-5681834
Length
696 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TCACGCTCTATACCCCTCAGATC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GTTTGTCATCCAGCTGTTGGAGGACTTGGTGTTTTTTGTCAGCGATGTTCCCAACAATGGGCAGAATGTCCTGGACATCATGGTCACCAAACCCAACCGAGAGCGGCAGAAGCTGATGCGGGAGCAGAACATACTTAAGCAG
Seq A exon
GTGCGTGTGCTCTTCAGGAACTCATAGCTCTCCAGCGGGGCTCACGGCTCTCCATCAGGGCTCAGGCCTCTTACTGAAGGGGTAGTGGAGGGGGTGTGGCTCAGTAGGAGAGCACCTTACTAGAATCCTCCGGGTAGTCTGGGGGCATGGCTAGGTTAGAGTAACTGCCTAGTGAAGAGCTGGGAGCATGGATTCCTGGTAGGTGCCTGCCTAGAATTTTCCAGCAGGGGTCTGGGAATATGGCTCAGTCATAGATTCTATGACTGGTAAGTGAGGGGCTCAGGGTACAGATCAGGGGTAGAGTCCTTGCCTAGATCCAGCCACTGGTAGAGCACACGACTCCTACCAAGGAGGAGCCAAGGACGTAGGTCAGGAGCACAGCGCTCGCTTAGCACATTCAAGGCGGGGGCTGAGGTGCCATCCCTCGCATTGGAGGAAAATGTATCTGAACCACGGCTTCCTTAAGCCCCTGAGAGGAATCGCCTCCTTCTGACCTCCTCCTGCAGGAGGACTGTGATCCTTATTATGGTGACGGGGACCCTGAAGCCCTCAGAGGCTGGAGTCCGTCTGAGCAGGACAGCTCAAGGCTTCTGAGAAGGGGAGCTCTGGGATGGAGTTAGTCAAGGTCAGGGCTCCTGGGATGATGCGGGGTGCAGGCAGGATGGGAGAGTCCCTCTCACGCTCTATACCCCTCAG
Seq C2 exon
ATCTTTGGCATCCTGAAGGCTCCATTCCGTGACAAGGGGGGTGAAGGGCCATTGGTGCGTCTGGAGGAACTGTCTGACCAGAAGAACGCCCCCTACCAGTACATGTTCCGCCTGTGTTACCGGGTGCTGCGGCACTCCCAGGAGGACTACCGTAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.2=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTTGGAGGACTTGGTG
R:
CTGGTTCTTACGGTAGTCCTCCT
Band lengths:
294-990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]