HsaINT0083298 @ hg38
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33665835-33667290:+
Coord C1 exon
chr6:33665835-33665976
Coord A exon
chr6:33665977-33667128
Coord C2 exon
chr6:33667129-33667290
Length
1152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CACCCTCTGTATTCCCCCAGGTC
3' ss Score
11.25
Exon sequences
Seq C1 exon
GTTTGTCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGATGTCCCCAACAATGGGCAGAATGTCCTGGACATCATGGTCACTAAGCCCAACCGGGAACGGCAGAAGCTGATGAGGGAGCAGAACATCCTCAAACAG
Seq A exon
GTGCGTGTGCACCCATGAGGGGACGCAGAGGGGCCGGGTGCCCGGGAGAGGGATGCCTTCAACTGCAGGCTCATCCCCCGCTTTAACAAAAATCAGTATATATGGGGCACGACCACGTGCCAGGGACTTCCCTAAGTACCCCACATGTGTTGACGAATTTGATCCTCACTGCCTGGAGGAGGCGCCGTGATTCTTACCCCGTTTTACTGGTGAGGAAGCTGAAACACAGGCCAGAGTCGCTGTCCCAGGGCTCACAGCTAGGAAGCGGCAGCCAGGATTTGAGCTTGTGATGTTGGGTCCAGAGCTGTGCTTCAAAAAATTTTTTTAAAAATTTTTTTATTATGAGAATCATCAAATATTGAGAAAGTATTGGAAGAATAGTACAGGGAACAAGGTGCCTCACTGTTTTGCTGCCTTGGCTTTATGTAGCTCGGTTCACACATCCGTCTTTCCATCCACACATTGCAAAATAGGCAGCATTTTACACCCAAAAGTTTCAGCAGGCATCCCTAACAATAGGGACATTGCCTTACATAACCATAGTACATGATCACACCTAAGAAAATTACAACAATACCAAGTCCATATCACATTTCTCTAATGTTCCCAGAATGTCTTTGTAAAGTTTGTTTTTTTTTTTTTAGAAACGAGGATCCAATTAAGGTTTTTTCATTCCATTCTGTTGCTCTGTCACTTTGGTCTCTGTTTCAGAACAATTTTTCACCTCTCCACCCAGCCCCAGCCTTTAAAACATTTTTGTAATTATGTAACATTTTACTTTGACAAGGCAGGCCTGTGTCTCATCTCTTAAGCTCTGGCCACAGCGGTCCGGCCTGCCTTTTCTCTTAGCCTTAGACCCTGAGCTGCCGAGACCCTCTGCTCCTCCCCCAGGCCCCAGATCTGAGCTGGGATTAGAATCCGCATCAGGGAGGGATAGGCTGGGGTCAGCTTCGGGATTCCAACAAGGAGTAGGGAGAGCTGGGGCTGAGGATGGCTGGGCTGGGGTTGTGGTCCAGCTTAGAATCAGCTCGAAGCTGATGTCCGGGCTGGCTTTAGGGCAGAGTCAGTTGGGACTCAGGGATGACTCCTGGGATGACTTAGGGGTACAGACAGGTGTTGGGGAATCAGTCCTCACCCTCTGTATTCCCCCAG
Seq C2 exon
GTCTTTGGCATTCTGAAGGCCCCGTTCCGTGAGAAGGGGGGTGAAGGTCCCCTGGTGCGGCTGGAGGAGCTGTCAGACCAGAAGAACGCCCCCTACCAGCACATGTTCCGCCTGTGCTACCGCGTGTTGCGGCATTCCCAGGAGGACTACCGCAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433:ENST00000374316:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.2=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCTGGAAGACCTGGT
R:
CTGGTTCTTGCGGTAGTCCTC
Band lengths:
294-1446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development