MmuINT0084539 @ mm10
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27091814-27093336:+
Coord C1 exon
chr17:27091814-27091955
Coord A exon
chr17:27091956-27093174
Coord C2 exon
chr17:27093175-27093336
Length
1219 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTACTCTCTACACCCCTCAGATC
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTTTGTCATCCAGCTGTTGGAGGACTTGGTGTTTTTTGTCAGCGATGTTCCCAACAATGGGCAGAATGTCCTGGACATCATGGTCACCAAGCCCAACCGGGAGCGGCAGAAGCTGATGCGGGAGCAGAACATACTTAAGCAG
Seq A exon
GTGTGTGTGCTCTTCAGGGGCTTATAGCTCTCCAGTGGGGCTCATGGCTCTCCTGCAGTGTTCATAGCTCTCCAGTGGGGCTCATGGCTCTCCAGCGGGACTCATGGCTCTCCCGCAGTGTTCATGGCTCTCCAGTGGGGCTCATGGCTCTCCCGCGGTGTTCATGGCTCTCCAGTGGGGCTCATGGCTCCCCAGCGGGGCTCATGGCTCTCCTGCAGTGTTCATAGCTCTCCAGTGGGGCTCATGGCTCTCCAGAGGGACTCATGGCTCTCCAGCGGGACTCATGGCTCTCCCACAGTGTTCATGGCTCTCCAGTGGGGCTCATGGCTCTCCAGTGGGGCTCATGGCTCTCCCGCGGTGTTCATGGCTCTCCAGCGGGGCTCATGGCTCTCCTGCAGTGTTCATAGCTCTCCAGTGGGGCTCATGGCTCTCCAGTGGGACTCATGGCTCTCCCGCAGTGTTCATGGCTCTCCAGTGGGGCTCATGGCTCTCCAGCGGGGCTCATGGCTCTCCAGTGGGGCTCATGGTTCTCTAATGGGGTTCAGGCCTCTTATTGAAGGTGTAGTGGAGGGGGTGTGGCTCAGTGGGAGATAACCTTCCTGGAATCCTCCAGGCATGGTCTGGGGCATGGCTAGGTTAGAGTACCTGCCTAGAATACATCAGTAAAGAGCTAGGGGCATGGATCACTGGTAGATGCCTGCCTAGAATTTTCTATCAGGGGTCTGGGAACATGGCTCAATCATAGATGCTAGAATTGATCAATGTGGGGCTCAGGGTGTGGATCAGGGGTAGAGTCCTTGCCTAGATCCAGCCATTGGTAGAGGTAGGGATTTGGGTCCACTGTAGAGCACATGAGAACCTACCAATGAGGAGCCAAGGATGTAGATCAGGAATAGAGCAGTTGCAGCAAGCATGCAAGCAAGGCAGGGGCCGAGGTGCTGTCCCAAGCATTGGAGGAAAATGTATCTGAGCCATGACCACGTGCCAGGCACTTCCTTAAGTACCCGGCAGGATTCACCTCATTTTGACTCCTCCTGCGGGAGAACTGTGGACTTCATTATGGAGGGAGGACCCTGAAGCCCACAGAGGCTGGGATCCTGCTGAGTAAGACAGCTCCGGGCTTCTGTGAAGGGAAGCTCTGGAGTTAGGGTCAGGACTCCTGGGACGACGAGGGGTACAGCAGGACGGGAGAGTCCCTCTTACTCTCTACACCCCTCAG
Seq C2 exon
ATCTTTGGCATCCTGAAGGCTCCATTCCGTGACAAGGGGGGTGAAGGACCACTAGTGCGGCTGGAGGAACTGTCTGACCAGAAGAACGCCCCCTACCAGTACATGTTCCGTCTCTGCTACCGGGTGTTGCGGCATTCTCAGGAGGACTACCGCAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644:ENSMUST00000049308:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.2=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTTGGAGGACTTGGTG
R:
CTGATTCTTGCGGTAGTCCTCC
Band lengths:
294-1513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types