BtaINT0078563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7724044-7725853:+
Coord C1 exon
chr23:7724044-7724185
Coord A exon
chr23:7724186-7725691
Coord C2 exon
chr23:7725692-7725853
Length
1506 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
TGACTCTCCGTGCTCCCTAGATC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GTTTGTTATCCAGCTGCTGGAGGACCTGGTGTTTTTTGTCAGTGATGTCCCCAACAATGGGCAGAACGTGCTGGACATCATGGTCACCAAGCCCAACCGCGAGCGGCAGAAGCTGATGCGAGAGCAGAACATCCTCAAACAG
Seq A exon
GTAGCCGTGCACACCTGGGGCTGGGCGGACCCGTGGCCAGCGAGCAGGACGTCTTCTATTTTTTTTTTTTAATATATATGTATTCTCTTTATTTTTGGCTGTGCTGGGTCTTCGTTGCTGCGCATGGGCTGTCTCTGGCTTCTCCTTGGGGGGGCTTCCCTTGTTGCGGAGCGCGGGCTCTGGGGCGTGTGGGCTGCCATAGTCGTGGCTCCCGGCGTCTAGAGCACAGGCTCAGTAGGTGTGGCTTAGTTGGGCTTAGTTGCTCCATGGCATGTGGGGTCTTCCCAAATCGGGATCGAACCCGTGTCTCCTGCATTGGCAGACGGATTTTTTTATCACTGAGCCACCAGGGAAAGCTCATCTTTTTGACATAAGCCTGCCTTTTCACCTCTCCAGCTGAGCTGTGGTCTCCCTTCTGTTTTCTCATCACTTCTTTAAACATTTTTTTTTAATTATTTTTTAAAAAATCTGAGGTGCGGTTGGTCTCATCACCTCTTCCTGCACTGTTACCATGTACCACCTCCGCCCTTAGTGCCCGTCACCTCGTTTAATCCTCCCGACCCAGGGGAAGTCTTCTTAATTATTATCCCCGTTTCACCCTCGAGGCACGCAGAGGTTGGAGTCACTTGACCGAGGCCACAGCTTGGAAGCAGTAGGGCCAGGATTTTCATGCAGATGTCAGCTTGAGAACTTGTGCTTTAAACACTTTTTTTTTCCCCAAATTTTTATTATGAAAAATCTCAAATGTTGAGCAAGTATTGAAAGAACAGTACAGTGAACACGCATTCGTTACCACTTTGCCAGTCTGGCTTTCTATAACTCTCCATCTCCAGACCGCCCCTGTGTCCACGCATCTCAAAGGAGGGTGCACCTCACCTCTAAACGTTTCAGTGTGCCTCTCCAAAGGGTAAAAGCATCGTTCTCTATAAGCAGAGTCTCACGACTACACCTAAGGAAACGAGCGACAATACCTGATCCGGACCAGCCTTCTGGGCCTTTCCCCAAACGCCTGTGTAAAGCTCGTTTTTTGGGGGGGCAATCAGGTTCCAACTAAGGTTTTCTCATTCCGGGTGATTCTGGCTCTTTGGTTGCTGTTCTATAACAGTTCTTCACCCACACCCAGTCCCCGAGTTAAACTTGTTTTTGGACAAGGCAGGCCTGCGTCTGATCCCTTAAGCTCTGGCCACCCGCTTTGGCTTGCCTTTTCTCTTAGCCTCAGAGTCCTGAGCTGCAGCCACCCTCAGCCCTCCCTGCAGAGGCTGAGGCAGGCCTGGGACCTGAGCTGAGACTAGGACTCGCGGTGGGGAGGGGCCGGCCGAGGCCAGTGTCCTGGGGACTCCAGCCAGGAGAGGGGAGCGGGTGAGGGGTGGGCTGGGGCCATGTCCAGCTTAGAACCAGCTGGGGGTTAATGTCAGGGTGGCCTCCGGGCAGGGTCAGCGTGAGGCTGAGGGTAATGAGGGGTGCGGGCAGATGCGGGGCTTCTTCCTGACTCTCCGTGCTCCCTAG
Seq C2 exon
ATCTTCGGCATTCTGAAGGCCCCGTTCCGTGACAAGGGGGGCGAGGGCCCCCTGGTGCGGCTGGAGGAGCTGTCGGACCAGAAGAACGCGCCCTACCAGCACATGTTCCGCCTGTGTTACCGAGTGCTGCGCCATTCCCAGGAGGACTACCGCAAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.2=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCTGGAGGACCTGG
R:
CTGGTTTTTGCGGTAGTCCTCC
Band lengths:
294-1800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]