DreINT0083662 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35575524-35575804:-
Coord C1 exon
chr11:35575694-35575804
Coord A exon
chr11:35575620-35575693
Coord C2 exon
chr11:35575524-35575619
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTTA
5' ss Score
0.84
3' ss Seq
AATGACTATTTTCTATACAGAAT
3' ss Score
7.1
Exon sequences
Seq C1 exon
AACTGCATTGCCACACATGAATGTAACGGCATCGACATCATCATCGCCCTCATCCTCAATGACATCAACCCTCTCGGCAAGAAGAGAATGGACTTGGTGCTGGAGCTAAAG
Seq A exon
GTTTTACAACCTTTCCAGAGAATTATTGCATATATTTTAAAAATGATTGAACTAAATGACTATTTTCTATACAG
Seq C2 exon
AATAATGCTTCAAAACTCCTGCTGGCCATCATGGAAAGCCGTCATGACAGTGAGAATGCAGAGAGGATTTTATACAACATGCGGCCTAAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.0=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCATCGACATCATCATCG
R:
AGTTCTTTAGGCCGCATGTTGT
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]