HsaINT0083218 @ hg19
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4818948-4821329:+
Coord C1 exon
chr3:4818948-4819058
Coord A exon
chr3:4819059-4821233
Coord C2 exon
chr3:4821234-4821329
Length
2175 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
CCCTTTGTTTCTCCAACTAGAAC
3' ss Score
10.09
Exon sequences
Seq C1 exon
AACTGCATAGCCACCCATGAATCCAATGGCATTGACATCATCACAGCCCTGATCCTCAATGATATCAATCCTTTGGGAAAGAAGAGGATGGACCTTGTGTTAGAACTGAAG
Seq A exon
GCAAGTAGGAATTAAAAGCAGAAGACAGTCATTTGGAAACAGTCACTTTTGTGTTTTGCCTTGGCACATGCACATGGGCAATTAGTCATGAGAGTAAATATTAAAGATAGTTCTTTAAATGAATGACCCAGGTTGCTAGTGCTGACTACGATGCAGAACTCCAACCTTTCTCTTCCACGTAAGGTATCTCATGAGGGGATAGGAGCTTCTGAACTGTTAGGTCACACAGAATGAAGATTCCTTGCTCCAAGCTAAGAAGTGAATCCCAACAGCATCGAGTACTAAATACCTTGGTTCTGAAAGTCACAAAGAGAGAAACAGTGGAAACGCCATTCCCTCTCTGGTTTCTGATTTTTCCCCATTTGAGGGAAAAGGGCCGGTTGAAGAATAGTACAACTAAGCCTATCTAGGACCAAAAAAAAAAAACCCAAAAAAACAAACATGTATTTTTACTTAATCAAGGAAATACCTTTTTCTCTTTTGTCACTGATTTAGCAGAAGGGTGGTTAATAATGTTGGTTTAAAATAAGGAAAATTACACAAACCAAAAATGTGCCTGCGGGCCTCTGCTGAGTTTCTCTGTATTGTGTACAAATGCGGGACTGCAGGTGACTGATGTGGAAGCCCCACTGACATTTGGACTCTCTATTACTCAAACAGCTTAACGGAATGAAAATCGTGACTTCTAGGTGCTAAACCTGCAGCATTTCCAAGCTGGCCTTTTTTGGATATTTGAGAAATTGATATACCATTCCTGATGTTGACTTCTAAAGTATACCCAGAAAACCCTCCCTTCTATGTAGGGGTTCCATAGGTTCTCTGAGAATCCCATGATTCAGTTTTAACAATTGAGCTTGCAGGCATCAGGTTTCTAAAGTATATTTCAAAACATGTTAGCCTTTCTGGACACATTTCCTTTTTAACTGTTCCCATGTCAGGGCATGTTGAGATTTGTCCTCTATCTGCCCATCCGCAGCAGCGAGCACTTCATCATTATCATGAAAGAGCCTAGAACTACAGGGTTTTGGCTGAAAGGTTGAGCTGTATTTATTGCATGAAGGATGTCATAGGAAAGGTCATTAGGAAAGATGGGAACACAGAAACCTGTGGGAATGGCAGTTATTTTTTCTTTACTATTTAGAACTGAGAGTCCACACTAACAGTCGATTTGGGTGTGTGGTTTAAATGGACTTTTTTTCTGCTATTTTTAATTCCTTTTGACAAATTGTGTTTTAGAGTGAATTTTAACAGATTCAACCTTGTGTACCTGGCCACCATTTATCAGAAAGTCCGAAATAAACAGAAGTTCATGTGCTCCTGGTCAGCATTTGAGTGACTTTTTCAACTAATCCAGTGATCTATGGATGATGATAGAAATTTGTGCCCTGCGATAGCATGATACCCTGACTCAACTGCTGTGACCTAAACTAGGGGAAGAAATAAGACCACTCTCACTGTCCAAAAAAAGAAAAAAAACCCAACAGCTTTCAAGTCCTGTACATAAAGAAGCATACAAAGTATCATAGACCCAGGGCCTAAAATGAAGTCAAGCCAGGAAGTACAGGATGTGGGGTGTGAACATGGGTGTTTTTAATGTAATGGGAAATTAGGGCTTGGCCTGCATACATTGTTCCTTTGGGTCACATTTGTTAACTAGTGTCAGATGTACTCATTATATTAGGGGTTATGAGAGCTAATAGAAATATTTTAAGACAGGGAAGAATTACCTTTATTACCTGTCTTCTCTGGCCTGCAAGGCCAAATAACAGTTTGTAACCACACCTGCCCGGAAGGCAGCACAGATCTGTGTAGTAGCAGCTTCTTCCCAACCACTGTCACCATGAGGGTGACAGTGTATCCGTAAGCACCCACGTGTAAATTCCCAATTTCTTCTAGGACTTGTACCAGCTAACATTAGGGCATAACACACATGCCCTGACAAATATGTGCCTCTTTGTCCGAAATCAGATTCTGCACACGTATCTGGGGTCTGAAGGGGGATGCTCTCTGCCTGGTGCAGATGGATTTTGATGTCCTTAACCCAGAGCTTCCTCATGGGGTGAAATGTTCGTCTGTTTAGCCGGGATGCCTCCCATGTGCCAGTTGGCACCTGCATTCAGGCCGGGCCCCCAAGCAGCCCCTCTACATTTCCTCTCCCTTTGTTTCTCCAACTAG
Seq C2 exon
AACAATGCCTCGAAGTTGCTCCTGGCCATCATGGAAAGCAGGCACGACAGTGAAAACGCAGAGAGGATACTTTATAACATGAGGCCCAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-ITPR1:NM_002222:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)