RnoINT0076663 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140514135-140516657:+
Coord C1 exon
chr4:140514135-140514245
Coord A exon
chr4:140514246-140516561
Coord C2 exon
chr4:140516562-140516657
Length
2316 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
CCTTGGTTCTCTCCATTTAGAAC
3' ss Score
9.25
Exon sequences
Seq C1 exon
AACTGCATCGCCACCCACGAGTCCAATGGCATCGATATCATCACAGCCCTCATCCTTAACGATATCAACCCTCTGGGGAAGAAACGGATGGACCTGGTGTTAGAACTGAAG
Seq A exon
GCAAGTAGAAACTGAGGGCTAGAGGTGGCAGCCTTTGGGAAAAGTCAATTGAGGCTTTGCCATGTGAAGCAGTTGGTATTGTGAAACTAAATACCAAAGACATTCTGTTTAACTGATCAAATGACCCACATTGTACATTCTGACCTGAAATGCAGAACTTCACTCTCTTCAAAGAAGGTCCTTGGGAGTGCCAGCTTTTCAAGCCACCTAGAGTGAAGAGGTGCCACCAAAACTGAGCAATGAATTCAGAAACAATAAAAAGCCTCAATTCTGAAATCCACTGGGGTTTGGAAGGAGAAGAGAAAGGCCATTTCTCCATGGTCTCTGATCTTCCTGCCTTTGGGGAAGGGGGCCAGCAGAAGAACAGTACTCCTGAGCCCTTCCAGTGTCTTAAAAATAAATAAATAAATAATTTTTTTACTTAGTTAAGGGACACCTTTTTCCATTCTGTCATTGACTGTACAGAAGGGTGGCTGAAAATGTTGACTTAAAATAAGAATGTGTCTCCAGTCGTCTGATGAGTTCTTTAAATTGTCACAAGTGGGAGACTATAGCTGCCAACCCTGGAGCAACCCTAGCATTTTAATGCCCCGTGGAAACAGCTTTATGGAGTTAAATGATGCCTTTAAGGTGCTTACTCTGTGGGGTTTACTAGCTGACAGTCTGTGTGCTGTTGCCCCAGTCTCTTGCAATCTCTTGTTCTAGGGGGCATGTGTGTGGTGGGGGTGGGGAATGTTCCAGAAATTGTTAAGGATTCAAAAAAAAAAAAAAAACACCTCCAATTCAAGAATTGACCTTGCAACCCACCCTGGTGTAGGATGCTGTTTGGAAACGTGCTAGCACCTCTGAGCTCATTTCCTCTTCTGCCGTTCCCACGTTAGGTAGGGCATGTTGAGATTTGTGTTCTCTCTTATACCCAGAGGCAGCAGTAAGGACTCTATCATGACTGTGAAATAGCCTTGAATTACTAAGGTCAGCTGAAAAGCTCATCCGTATTTATTGTATGAAAGGCGACAGGAGAATTCAAGGCCTCGGGAAAATGTTAACACAGATTTCTCCAGGAACTGCACGGTTAATTTTATTTTGCCTTTAGTATTTAGAACTGAGGGTCCAAACTCAGTTGATTTGAACATATGGTTTAAGTGGAATCTTTTAACACTTCTTTTTTTCCTTCTGATAAATACTTTATACTTGACTTGAATATCATTCAAGCTCTCGTATGGCTACCATTTATCAGAAAGTACATGATGAGTATCTGAAATAGACTGAGATGTGCATGTGTTCCTGGTTGGCATTTCAGTGCCTTCTCAAACAAATTTAGCCATCTGAGGATTATGCTAGAAAGACAGAGAGCACAGTAAATGGACTGAACTTCTCTGACCAAAGCTGGGGAGGAAAACTGGTCTCAATTTCCAGCCCCTAGAAACAAAACGCAAACTTTTGAGGCCTATATACAAAGAAGTATATAAATTGCAGACCTGGGGCCTCAAATGATATTGATCCATGAAACGCTGGGTGTAGGTGCATGGGCATTGTTAACATAATGGGAAGTTATGCCTCATTGGATGTGAAGTGTTCCTTTGGACCACTTTTGTTAACTAATAGCATCTGTACTCATGATATTAGGAGGCAGGAAAGTTGATGGATTTTAGGACAGGGAGAAATTACATTTGTTGCCTGTCATCTCTGTCCAACAATATTGAATATTTAGGGAACAAAATATTTAGGGAAAAAAAAGATTGCATCTATACTGAAAATGTATATACCTTTTACTTTATCTTATTCCCCAAAGAGTAGAGTCTGAGTGTTGACACACCATTTATGCCATACCAGGTCTTACAAATAATATAGAGTTGCAGTAGACAAAGAAGATACATAAGTAATATGCAAATGTCATTCCATGTAAACAGTGAGAAGACCACACCCACCAGCACCCTTGCGTAAATCTATTTCTGCTAGAGCTGCTATGGGATTTACTAGTTAACAGACCATTCTTGAAGGCAGTCTCTTAAGTGTGCTCCTGAACACTCTCTCACCCTATTCTGGGGTTCCAGGGGTTGTCAGAGATTCTAAAAATTATAATGCATGTCTTAACAAATATAGGCCTCTTAGGCTCAACTCAGACTTCGTCCATATGCTTCTAAGGTTCCCAGGAGCATACCCTCTGACTGGTGAAGGTACTCTGCAGTGGGCTTGGTCATAGGATGAACCTGTCTGTCTAGCTGGGATGCATACTCGTTCGTCTGGGCACTCGTCTGTCCAGACAGCTGCCCAGGCTGCTCCTCCATATTTCTTCCCTTGGTTCTCTCCATTTAG
Seq C2 exon
AACAATGCTTCAAAGCTACTCCTGGCCATCATGGAAAGCAGACACGATAGTGAAAATGCAGAGAGGATCCTGTACAACATGAGGCCCAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]