GgaINT0021985 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19146037-19147387:+
Coord C1 exon
chr12:19146037-19146147
Coord A exon
chr12:19146148-19147291
Coord C2 exon
chr12:19147292-19147387
Length
1144 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
ATGTTCTTCCTTCCCTTTAGAAC
3' ss Score
11.32
Exon sequences
Seq C1 exon
AACTGTATTGCTACTCATGAGTCCAACGGTATTGACATCATCACAGCATTAATTCTCAATGATATCAACCCTTTGGGAAAGAAGAGGATGGACCTCGTGTTAGAACTGAAG
Seq A exon
GCAAGTGAATATTTAGTGTGATCCTGTTAGCATAAGCAAGATGAACCATAATCTTATTGCTGGAATCACGTTGATGGTTATTATATCCCAATATTCACAAGTGCCAAAAAATTACTGTGTCAGAGAGCTGAACACGGTGCCCAAGGATTGTTTGTCACAGGTATTTCATCTTCTAAATGGTAACATGGAATCACCTTTTTCACACGTGGGTGACTGCAGGCAATACTGAGGAGTCCTAAAATAATTATCAGTGAAAAATGTAATTCCAATTAAAAATTCTGTTGTTTGAGAGCTTTTGTATACACAGTGGAAGTCAAATTTCTCATGCTATGCCTAATTGCCTAAATACTTCATTGTTGTTAGATGGGTTGACATTTAGTCATCAAGAATTTTTTCAGGCTACTCATATTAATGCTGAAGTAACTAATCCTGGTACTGATTTCAAAGTACACTGGCAGGTTGTCTTCTAACTACAGTAACCGTGGAGTACTCCAACTTCAGCCCACGTTTGAGAAGTATTTCCTTTCTGACTTCTTGTCCTGTCTCATAGTGCATTGTCTACTTGTCTTCCGTTGCCGACTCACGCCATTAATATGGGTAGTGTGGGTTTTTTATTATTCTAAATAAAAAATGCTTTTAGACTCAATTAGCATTATACTTCAAAATTAAATACTTCTATTGGTTTTTATTGTCAATCATGATGGATTTTAATCTTAATTATTCGTATTAGAGTAGTCTGGTGCCTTGTGGTAGTTTCCCATTTCCTTCCTCCTCTTCTTGGCATGAGCAGGTCACACGGTAATTTTCAGTTAAAAGCAGCAAAGCACGTCTGTGTCTTCAGCCTTGGCTGTCCTTTGATTTAATCAACAGTCTCCAGTAGCGCTGAGCTGCACCACTGTGGAGCTGAAAGCATGCAGTAATGCTGCAGTGTTTTTCGCACAAAATGTACACCAACCTCAAAACCTCAGTCTGTGACAAAACTTGAGTTTTTAATTTGGTGCTCCATGATAAATAGGGTTTGGAAAATAAAAGGAAAAAGAAGAGGCATCTGAAGCCCTTCTTGGCAGCATGCGTGGAAGAGCTGAGGCTGGGTGTGCTCTGCTTTTGGCTCCTGGCAATGACTGATGTTCTTCCTTCCCTTTAG
Seq C2 exon
AACAACGCTTCAAAGTTACTCTTGGCGATCATGGAGAGCAGGCACGACAGCGAGAACGCAGAAAGGATTCTCTACAACATGAGGCCCAAAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTATTGCTACTCATGAGTCCA
R:
CAGCTCTTTGGGCCTCATGTT
Band lengths:
206-1350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]