DreINT0083701 @ danRer10
Intron Retention
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16024245-16026237:+
Coord C1 exon
chr18:16024245-16024370
Coord A exon
chr18:16024371-16026114
Coord C2 exon
chr18:16026115-16026237
Length
1744 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
AAACTCTTCTTCATCATCAGGGG
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATCCTGCTGAGTCTCAGTAAACTCTGCTCTCCTGCTAAGAAGACTCGCGTGCAGCAGCAGCGGTTGCTGAAGAACATGGGGGCTCACACTGTGGTGCTGGACCTGCTGCAGATCCCCTATGAGAAG
Seq A exon
GTGAAGAGATGCTGGTTCTGCAGTGCTCAAAGGATTAATTCAGTCTTTGATGGATTAACAAATCTGAAAGTTTGGGCATGAATTCAGAACAAAAGTCTTGTCGCCTATCCAAGTTTTTGGAACAGCAAATAATAACTTGACTTCTAGTCCATCAATTGGTATCGAAAGTGGCTTATATAAAAGGCAAAGGCCCCTAGGTTACGCTTATTTTACTAACATAAAATATATTCATGTCTTGATTTTTAATTATTTAATTAGGACAGGAAAGTCTGACTTTGCTGAGTAAAAAGTCTATTTGCTTAACAGAATTAATGTGCAGTATAGAATATAACGTCATGGTGCAAGGGCAAAAGAATTAGTACTGTGTGTGACTCCCATGAGATTGGAGGACTGCATTTTTTTGCCCTCTCCTGTGGTTTGTAATGTAATGGGCAGCACAAATGTCTTGATACCTCAGGCTGTTGATGTTGCTATCCACTCTGCAGATCTCTCACATGCCCTCATACTAAATGTACTCCCAAACCATGATTTTTCCTTCACCAAACTTTACTGGTTTTTGTGAGAATCTTGGCTCCATGTGAGTTCCAATAGTCTTCTGCAGTATTTGTGATGATTGGGATGCAATTCAACAGATCATTCATCTGAAACATGTACCTTCTGCCACTTTTCCATATAATAAACTATAAGTCAAGTTAATATTTGTTGCTCTTAAAACTGGGATTAACGACAAGACTTTTGTCAGGTAGTGTACAGGTTTGGATCACGTGAAGAGCATGTAATAGGTGATAAAGTTTACAAGAAAAATGAGGATGAACTGTCTCCTTAAGCTATATTCACTCTAGCTGCATTTACAAAAACTTCCATAGTGTGCCAAGTGAAACTGTCTAATGGAAGAAAAAATAAATCTATGCAAATTCCAGTCACATCAGGCAGACAAACGGATATCAGTTTCAAACCACAGAAAAAAAATTATCAGATTTTTTTTTATCTTGCTGTCTAAATATGATCTCATTTAAATGAGATATGCATTAAAATAGATTTTTTATCTGGCAGTCATAATAAGGCTCATGTTGTTCTAAACTCTTAAGGCTTTTTCATTTTTGGTGAACAAATGATTGGTTTTTTAATCAAATGTGAAAAATTTCAGTTTCTCCATTGAAAATCTAAAAATAAAACACATTTTTGTGCTGAACTAAGTATTATTATAAGTAAAGTTTATTTATAAAATTTCAATAGGATCACATGCTTATGATTGTCCACAGCCGGTCCAGCATTAGCTAACACATGATTCACCAATCAGTCTTGAATATGTACCTAGTCAACATATATGTGCAGTTTGCTTGTTCTCCCCATGCTTACGTGGGTTTCCCCCAGGTTCTCTGGTTTCCTTTTACAGTCTAAAAACATGCAACCTAAGTAAAGTTAACATTCTGATTTGGCATCAGAGTCAAGCTCTTAGTGAGTTGTATATCTCTCTATAGTTATCCTAAACATGTCAGTAGCCAGAAACGAGTCAGGGGAGTTTATCAAGATCTACCTGAGCTAAAACTCCCCTCTCACCCTGCTAATGGGAGGGAGCTCAGGGCTCGATTATCTTATGAGCTCAGGGCTATCTACCGGGACAACATGCCAAACAAGCTTTATTATCCATCATCAGCAAAATGTGAACTCTTGATTTTTTATTTATTTATTTTTTTGGTGAAATGGCTGTTGTACTGACAATAAAACTCTTCTTCATCATCAG
Seq C2 exon
GGGGACGAAAAAATGGATGAGATCATGACTTTAGCCCACACTTTTCTTCAGTATTTCTGCAAAGACAACGTTCAAAACCAGGCGCTGCTACACAAACATCTCAACCTCTTCCTCACACCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909:ENSDART00000061134:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(23.4=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCAGTAAACTCTGCTCTCCT
R:
CCCTGGTGTGAGGAAGAGGTT
Band lengths:
240-1984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]