MmuINT0084498 @ mm9
Intron Retention
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146276817-146278120:-
Coord C1 exon
chr6:146277995-146278120
Coord A exon
chr6:146276940-146277994
Coord C2 exon
chr6:146276817-146276939
Length
1055 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
TGCTGCCCTTTGACCCTCAGACC
3' ss Score
8.55
Exon sequences
Seq C1 exon
ATCTTGATTAGGCTGAGTAAGCTCTGTGTGCAGAACAAGAAATGCCGTAATCAACACCAGCGGCTGCTGAAAAACATGGGGGCTCACTCCGTGGTGCTGGACCTTCTGCAGATCCCCTATGAGAAG
Seq A exon
GTTTGGCCTGTTTTACTCTCTTTCTTCAATTCAGTGTTACTTAAAACGTATCACCAAGTCATGAAGAATTTCCTCCCCCCTCAATTGTTTAAGAGGGATCCTTAGAGATCCTGGGTGTCTCAAACACCCAGCACCCTCGAGTTCCTTCTCTTATTTCCTATGCACAAGGGCGTGCTCTTTCACAACCCTGATCAGCATTGCAAACTAGGAAAGTATGACAAACTCTCACACACCATGAAGGTTTTTCCCATGGTCCCTGCCATGTCCTGTTGACACAAGTTCCTGCTTCAGAAGCAGATAAGACTCATGGCTTGGTTGTACTGTGTGCTTCTCTCTCAGTCCTGAACTCTCTTAGATTGCCAGTTAGAAGAGAGTCCTCCCTCTCCTACCATGCTTTGCTTCAGTTTCCTGTCTTCAGTGGGAATATGGAAGGATGCTAAGTTCTGTATCGAGCTTCCTAGCAGGCACACACAACTCTGATTTGCTCTAATGCTCGTGATGTGCTGTCTGCTGGCGTCTCCACAGTGAGGACCTCTCCCTCTCTTTGCAACGAATAACTGTCCTGTGTAGAGGTTCTTTTGAAGATACACCATCTTTCATCTGACTTTTAATTCACATTTTTGCTAGCATAGGTATTGGTGGGTAATCAGAAAGTTTGGGAGAAAGAAGGAGATGGTCTGTATAACAAGGGGGGGGGGTGGGAAGCGTGGAACAGACAGACGGGAAAAGGGAAGAGAAGGTGAGAAATTTCTAGAACACAGGAAAGAGGGGGCAGGGCAGATGGAGGAGGTGCAGAGACACGGAGGGCGTGAAGAGAGAAGAGCCATGGAGGAAAGCGCCCATGGCGGAGGGTGGAGTACGTGCTATGTGGGCTTGTGGAGGGAGGGGCCTGCGGAGGGTGGGGCCAGCAGAGGGAGAGGCCTGCGGAGGGAGGGGCCTGCGGAGGGTGGGGCCTGCGGAGGGTGGGGCCTGCGGAGGGTGGGGCCTGCAGAGGGAGGGGTGCATGCTGTGTGGGCCTGCTCTCTTGGGGTTACATGCTGCCCTTTGACCCTCAG
Seq C2 exon
ACCGACGAGAAGATGAACGAGGTGATGGACTTAGCCCACACCTTCCTGCAGAACTTCTGCCGTGGGAATCCGCAGAACCAAGTTCTCCTTCACAAGCATCTCAATCTGTTCCTAACTCCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-Itpr2:NM_019923:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(23.4=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTAAGCTCTGTGTGCAG
R:
GCCAGGAGTTAGGAACAGATTGA
Band lengths:
237-1292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: