RnoINT0076703 @ rn6
Intron Retention
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180630958-180632091:-
Coord C1 exon
chr4:180631966-180632091
Coord A exon
chr4:180631081-180631965
Coord C2 exon
chr4:180630958-180631080
Length
885 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
3' ss Seq
TGCTGCCCTTCGACCTACAGACC
3' ss Score
9.12
Exon sequences
Seq C1 exon
ATCTTGATTAGGCTGAGTAAGCTCTGTGTGCAGAACAAGAAATGTCGTAATCAACACCAACGGTTGCTGAAAAATATGGGGGCTCACTCCGTGGTACTGGACCTTCTGCAGATCCCCTATGAGAAG
Seq A exon
GTTGGCCCTGTTTTACTGTCTTTCTTCGATTCAGCATTGCTTAAAACGTGTCGCCAAGTTATAAAGGTTATAAGAATTTTCTCTCCCCTTAATTGTTTAAGAGGAGCCCTGTCCCAAACACTCAGCACCCTTGAGTTCTTTCTTGTGTTTTCTATGCAGTGGGGCAGGCTTCCACACAATCCCGCTTCAGCCTTGCAAATTATTAACGTATAATGAATTTCCACCGAGTCCCACACACCATGAAGGCTTTCCCCGTGGTCCCAGCCATGTCCTGTTGGCACAAGTTTCTGCTTTAGAACCATGTAGACTCACAGCTTGGTTGCACTGTCTACTTCTCTCTCAGTCCTGAACTCTCTTAGATGGCCAGTTAGAAGAGAGTCCCCCCTTTTCCTACTGTGCTCCCGTTCAATTACCTGTCTTTGGCGGGAACGTGGAAGGATGCTAAGCTCTGTGTAGAGCTTCCTAGCAATCACGTGCAACTCTGATTTGTCCTAACGCTAGTCATGTGTCTCCTGGGTTCTCCTCAGTAAGAATCTCCCCTTCCTCTTGCAATGACTAGCAATACTGTGTAGAGGTTTTTATTGAGAATGCCCCATCTTTCGTCTGACTTTAATTACATTTTTTGCTAGCATAGGTATTGGTGGGTAATCAGACAGTGTGGGAGGAAGGAGGAGTTGGACTGTGTGACCAGGAGAGGGTGGGGAGCATGGAGCAGAGTGACAGGAAAAGTGAGGTGAGAGATATTTAGAACAGGAAAGAGGGGGCCGGGTAGACGGACGGGATGCAGAGACACAGACAGCGTGAAGAAGAGCCACGGAGGAGGGAGGGATGCACTGCTGTGTGAACTTGCGCTCTTGGTGTCACGTGCTGCCCTTCGACCTACAG
Seq C2 exon
ACCGACGAGAAGATGAACGAGGTGATGGACTTAGCCCACACCTTCCTGCAGAACTTCTGCCGCGGGAATCCACAGAACCAAGTTCTCCTTCACAAGCATCTCAACCTGTTCCTAACCCCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804:ENSRNOT00000040645:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(23.4=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTAAGCTCTGTGTGCAG
R:
TCCAGGGGTTAGGAACAGGTT
Band lengths:
237-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]