GgaINT0122247 @ galGal3
Intron Retention
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69965683-69967277:-
Coord C1 exon
chr1:69967152-69967277
Coord A exon
chr1:69965806-69967151
Coord C2 exon
chr1:69965683-69965805
Length
1346 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TTCCTCAATTCTTTCTGCAGAGC
3' ss Score
9.36
Exon sequences
Seq C1 exon
ATTTTGGTTCGACTCAGCAAACTTTGTGTTCAAAACAAAAAGTGTCGAAATCAGCAGCAGCGATTGCTGAAGAATATGGGTGCCCACTTGGTAGTCTTGGACCTTCTGCAGATACCCTATGAAAAG
Seq A exon
GTTGGTCTGATGGTTTTGATGGTAAAGGACATGACCTCAGTGAAAGGAAGGTCTCAAAAGATCTCAGAATCAATTTGAAAAATTCTCCATGCTAAATTCTGTGAACTGTGGTACAACTATAAAATAATGATGGATTTCTCTCCCTTGATACTAATGAGATCAGGATCAAGTTTAAGTATGACTCTACACAAAATGTGTTTTATTAGGAGTTAATATAGACTGCTTTAGGTTCCTGTATATCACTGTGCTGACATCCCATTTCTAAAATGATTAAACCTTAGAATTACAGACACATTGTACAGTCATAAATGATGATTCAGTGGAGCCCTTGGCGAAGTATCTAAATTCTTCTATTAGGTCCTGATATGAGTGCTAGTGTAGATACATACAATGGACAAGCAGGCTTTCAGGGACCAATTCTGAAATCATTTCAGTATTTCTGTGATGGCAAGCCTCTAACCTAGGTCTACTTCTGGGTTTTCCGTAAAATAATGTGATTTGTATTGATTTAGTGGCTGTGAGCATATAAGTGAATGATTTAGATGAGCTTTTAAATAGAGTATCTTTTTAGATCTTACATGAAGCACTGAAAGGAGATAGAACCTCTGGGCTGCATTTTCCCGAGTGTAATACATTAATGTTATGATAGAGACACTGGATTCAGCTCTCTTCAGTATAATAATTAGTGCTTGTTCATATAGGTGATTCATTGCATCATGGTTTGACTATTATATGAGAGAAACATAAAATCTGAATGAGTCTAGACATATATATTTTTGTAGGTTATTTGTTTGATCATTAACGTGATTGACATAGACATGCACACATTTTATATATAACTGTATAACAGCCAAAGCTTTTCAGAAGGTGGAATCATTACAGACTAGTGAGTGCTTTTGAAAATCAAGCCACTTACCACTTGTTTTTTAAACTAGGAAATGATAAACCTGCAGTAGGAAACCATGCTTTGAGTTCACTATCTTTTATGTCTTGTAGTTATTACTTTATTTTTAGTAGTAGAACCCCAAAAAAACCCACAGTTCCTCCAGAAATTCGTAAAAGAATGGTAACTGCAGACTAAGCCATGAGACCTGGGGCTAAGAAAACTGGATGGAACAAATTAGAAACTTTAGTGTTTGTGCTGTTACCTGTGTCTCCCTATGGTCAAGTAGCTTCACTGTAAGGTACAGTGTTAATGGACTCTAAAGGAAACTGGATAAGTTGCTTTTGCCAGAGGGAGAATTCCTACCCTATAAAGGCTCAGGTTTGTTCCATCCTGAATACTGCAGATATATCAAGTGTGTTTTGGTATGTCCAGCTGAAGCATTCCTCAATTCTTTCTGCAG
Seq C2 exon
AGCGATGAAAAGATGAATGAAGTTATGAATCTAGCCCACACTTTTCTTCAGAATTTCTGCCGAGGAAATCCTCAGAATCAAGTTCTCCTCCATAAAAATCTCAATTTATTCCTAACTCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071:ENSGALT00000022784:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(23.4=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTCGACTCAGCAAACTT
R:
CCCTGGAGTTAGGAATAAATTGAGA
Band lengths:
246-1592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]