HsaINT0083257 @ hg19
Intron Retention
Gene
ENSG00000123104 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:6181]
Coordinates
chr12:26752920-26755428:-
Coord C1 exon
chr12:26755303-26755428
Coord A exon
chr12:26753043-26755302
Coord C2 exon
chr12:26752920-26753042
Length
2260 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TGCTATTCTTTAACTTACAGAAT
3' ss Score
8.97
Exon sequences
Seq C1 exon
ATTTTGATCAGGCTAAGTAAACTCTGTGTGCAGAATAAAAAGTGTCGGAATCAACATCAACGATTACTGAAAAATATGGGGGCGCATTCGGTGGTGTTGGATCTTCTGCAGATACCCTATGAAAAG
Seq A exon
GTTAGTCCTGGTTATTTTTTGTTCTTTAGCTTTTTATTTTGATACAATTTCAAATGTTTTGCAAAGTTCCAAGAAATTTTTTCTTTCTTAATTATTTTAGAATAAATCACCCACCAGGTGCCCCATCACCCCTGAGCCCTTTTGTGTATGTTTTCTACAAACAAGGGTACACTACCATGTCACCACACTAGAGTCTTCCATATCAGGAAAGAGCAAGGCACTTTACTGCCACCTAGTCCCTACACGCTACTCAGATTTCTCCCTTTGTCCCAATTGTTTTCGACTTGAAAAAAAGATCCACTTCAGAATCATGCGCTATTCGGTTGTCATGTTTATTTAAATCTCTTCATGTGGGAACTCCCATGACATTGACACTCTTGAAAATAACCAGTTATTTTGAAGGATGTCCTTTAATGTGGATCATCTGATGTTTCCTCGTGATTAATACAGTTAGGCATCTTTGGCAGGGACATAACCGGAGTGATGCTGTGTTCGTCTCATTGCTTCCTATTTGTTGGTGCACGATTTTGATTTGTCCCATGACTGATGATGTTCACTTTGATCAATTGATTGAGGTTGTGTCTGCCAGGTTTCTCTGATTTTTCCCTTTGTAATTCCCTTGTAATTAATAGGTATTTTGTGGAGCAGTTCTGTGAAACTAAGTAAATATCCCATTCTTCATCAAACTTTCAACTTATTCATTTATTGTGTTTATTTTTATCAGTATGGGTTTGTATATATTCATTTTATTCAATAGGTTATAAAGGGTTCTATCATTATTTATTTTGATTTCCAGATTGTCTCAGATTTGACCAGTGGAGTTCCTTTGAGCTAGACTATCTGTCTTCTAACATCACCCCCACCATTCTTTGATTACTTCCTTGCTTTCTGGCACAATAAAATGTTCCAGGTTCATCTTGTATTCTCCTTGCTTCGACTCTAGAATCAGCCATTTCTTCAAGAGGCCCCATTTCCATTTGGTGGGAAATGGTATTTAGGAGCAAAGTTCTGAGAACTGAGTTCTCAGTTCTTATTGCTTTGGGGTGTTGCCCCCATAGGCCCTCTAAATAGGCAAAGCTAGGGAATATGCATATGTATGGGTGCATGTAGAAATTTATTTAATATTAATATAAAATACCACTGAAAACATGAGTCCATCTGAATTCGTAACAATGCCCACATGACAAATGGTACAATCAACTACATGGGGAAATTTTAGGTAGTTTCACTGATGTTGTCACAAGACCACTTTTAAGAAGACAAATTTGCTTCTCTGTGAATTTTGAGACTTAAGTTTCTTGTTAAGATTCTTATAATCAAATGATAGTAGCTTAGTATAGGACTTTGGAAAATGGCAATGAATAAGGATATTCACTATTAAGAGTGTTAAGAAAGAGGGGGACAAAAAGGAGGAGAAAATAGAAGAGAAAGCAAAGAGGAAAAGAAAAAGAAATAGGTGGAAATAAGAGACAAGGTAAATAGCAAAAGGAAGGGACAGAGAGATTGGAGAGAGGAAGAACTGAGATGAGTGAGTAATAAATATATATACAGAGAAGATTGACAGAGTGGAGGAAGAGAGGAAGTTTGAATAGAGAGGAAATAGAGTGAGAGCAGAGCAGGAGAAAAGGGGATGGGAGCAGAAGAAATAATAGATAGGAAAAGAGGAAAAGAAGAGAGGAGATGGAATAGATGTGGGAGAAAGAGTAGGAAAGGAAGATGTATGAGAAAGAGAGTGAAATAGAGTAGGGAAAGAGAGACAAGAATAGAAGCAGCATGATGGAGATATAGGCATACTGCAAAATGAGACATTTAAAGGAAGGGAAGAATTATGGGGACTGGGGAGTACAGCAGAGAAGGGAGGAGAAACAGAGAAAGATAGGGACAGAGAGGAAAGGAGGACAGAGGAGGTGTGGAGATAAAGCAGAGGAGGAAAAGGTGGCTATGTACAGAGATGAGGAAACGTGGTGGACAGTTGGAAAGATTGGGGAGAAAGAGAAGGGCTGTGAAATGAAGGGGGCATTGGAAAAGTAGAGCAGAATAGAATCAGGAGGAATAACCAAGAGAAGGTGAGAAAGATCTAGAAAACAGAGAAGAGGGACAGGAGGGGAAACTGGGAGAGGTGTGAAACATAAAGGACACAGAGAAAGGAGATCAAAGATGGGCAGAGAGAAAAATGGTATGTGGGTGAAGGAGAGATTTTTGCATAACATTTGCTGTCTCCTATGTTTGTTTCTATCATGTGCTATTCTTTAACTTACAG
Seq C2 exon
AATGATGAAAAGATGAATGAAGTAATGAATCTAGCCCATACATTTCTGCAGAATTTCTGTCGAGGAAATCCACAGAATCAAGTTCTTCTTCATAAACATCTGAATTTGTTTTTAACTCCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123104-ITPR2:NM_002223:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(23.4=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)