DreINT0083743 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21294733-21295160:+
Coord C1 exon
chr8:21294733-21294908
Coord A exon
chr8:21294909-21294997
Coord C2 exon
chr8:21294998-21295160
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
3' ss Seq
ATTACTCATCTTTATAACAGAAC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GTGCAGAGGGCGAGAGAGACTGGCTAACAGTGGCAGCATTACAGTGTCGCCTGGACAAAGAAGGCGGCACCAAACTCTTCACAGACCTCATCACCAGCACCAAGAATGAGAAGATCTTCCAGGAGAGCATTCAGCTCGCTATCTGTCTGCTAGAAGGGGGAAACACAGAGATCCAG
Seq A exon
GTGGAGGAATAGCTTCTGTGCTAATAGAGCTAGCAGGAGGATCAGTACATTATGCATTATTATGATTATATTACTCATCTTTATAACAG
Seq C2 exon
AACTCCTTCTACAAACTCATGATGGGAGACAACAAGTCTGAGAAGTTTTTTAAAGTGCTGAATGACCGCATGAAGAACGCACAGCTTGACATCAAATCCACCGTCTCTGTCAATGTGGGGGAAATGAGCAACAAAGCCAAAGATGACAAAGATCTGGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCATCACCAGCACCAAG
R:
CAAGCTGTGCGTTCTTCATGC
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]