MmuINT0084566 @ mm9
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27248802-27250610:+
Coord C1 exon
chr17:27248802-27248971
Coord A exon
chr17:27248972-27250435
Coord C2 exon
chr17:27250436-27250610
Length
1464 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CACCTCCTGTCCTTCCCCAGAAG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GCCTGGATCAGGACTGGTCAGCCATCGCCGCCACCCAGTGCCGGCTGGACAAGGAGGGGGCCACCAAGCTGGTGTGTGATCTTATCACCAGCACCAAGAACGAGAAGATCTTCCAGGAGAGCATTGGCCTGGCCATCCGCCTGCTGGACGGGGGCAACACCGAGATCCAG
Seq A exon
GTGCGGGGGTCAGGGCAGAGGTCCTCCAGCTCAGGGCACTACCTGCTCGCGAGGAGCTGTGGTACTGGGGCCGAACCACGGGTGATTGCACATTCTATACCTGTGCCCGTGTCCGTGACCCTGTGCCTGCCCTGTACCCTCTGTCCTGTCCCCCTAGGTCTACTCTTCTGGCATTTCAGAGTCTGATCTTCCTTGCCTTCTCTCCATTATTCCAAAGCCCTAACTCCTCTAACCTCCCCATTCATTCATTCATTCATTCACTCATTAATTCTGTTCATTCACTCATTCATTCATTCACTCACTCACTCATTCCTCCATTCACATTTCCCAATCAGCACTCAACACTAAACTGTGTCACTGACAATGATGTAGGCACCAAGTGCTCAGCTCTGAAAGACAGACGTGCTCTCTGTTCTCTTGATACCTGTGTTTTGTAAGGGACATAGGCAGAGTATAGACACAGTCTGGGAACCGGGATCCAAGACAAGAGATGAGGAACGCAGGGCACATAAGTTAAAAGGAGCAACAGGCTGGCCTCGTGACTTGGGTTTGCTGTCTCAGTCACTCGGCATGCTAAGTCGGGGTTTGGGGGATCCCAGGTTCAAGGCCAGCTTGGGTACTGTCATTCGCCTTGTCTTAGTAAAAAGAGAGAAGGGGTGGGGCAGGCCTTTAATCCCAGCATTTGGGAAGCAGAGGCAGGTGGATCTCCCGAGAGTTGGAGGCCAGCCTGCTATTACATGGTAAGTTTCAGGACAGCCAGAACTATGTAGAAAGATTCTGTCTCAAAACAAACAAAAACAACAAAACAAAAATAAGCCCCATTCCTGGTGGTGGGCGTGGTGGCACTCACTTAGCATTCCCAGTGCCTTAGGCTTCATCCCTGCACAGATGGGATGGCAAACACGCAAAGGGCAAGCCTAGGCGACAGGGTCGTAGACCCTGTAGATGCTGGAGCTGTGTGGGAAGAGTGTGCAGCGCAGCCTGAAGGGGCTGGCGTCTTAGGCAGCAGGCTCTCGGGTAGCTTCCTGGCACTGGGCGCCTGAGGCTTTTCCTCAAGGGAGATGGAGCCACCTAAGGCTTCCTGCAGTGTGAAGACAGGACTTGGGTTTCCAAGGGATCCCTCTGGCCGCAGTGTAAGCAGCTACTGAAGCCGGTGGCCAGGTGGCCAGCAGGGTCTGGGCAGAGGCAGCACCCCCACCCCCACCCCCAGCATTGTGGTCAGGGCAGGCTGGCCTTCCAGGTAACTGCTGGGCCTCGAAGCCCATCCCTAGCCCCTCTGGGAGTGCATATGTCTCCCAGACTTCCTGCACTGAGTGTTGTTCTCAAACTCCAACTGTAGCCAAGATGACCCTAAATCCTTGACCCTCCTGCTGCCACCTCCTAGGGCTAGCGTGACACCCACTTAACCATACCCAGAGCCAGGCACGGCGCTGACACCGCTCTCCACCTCCTGTCCTTCCCCAG
Seq C2 exon
AAGTCTTTCTACAACCTGATGACAAGTGACAAGAAGTCGGAGCGCTTCTTCAAGGTGCTTCATGACCGCATGAAGCGCGCCCAGCAGGAGACCAAGTCCACGGTCGCTGTCAACATGAGCGACCTGGGCAGCCAGCCTCGTGAGGACCGGGAGCCGGCAGATCCTGCCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-Itpr3:NM_080553:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCAGGACTGGTCAGCC
R:
CAGGATCTGCCGGCTCCC
Band lengths:
334-1798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: