HsaINT0083325 @ hg38
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33684774-33685533:+
Coord C1 exon
chr6:33684774-33684943
Coord A exon
chr6:33684944-33685358
Coord C2 exon
chr6:33685359-33685533
Length
415 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TGGCCACTGTCCACCTCCAGAAA
3' ss Score
8.1
Exon sequences
Seq C1 exon
GCCTGGACCCAGACTGGTCGGCAATCGCAGCCACCCAGTGCCGGCTGGACAAGGAGGGGGCCACCAAGTTGGTATGCGACCTCATCACCAGCACCAAGAACGAGAAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCTGGATGGTGGCAACACAGAGATCCAG
Seq A exon
GTGTGGGGGGCCTGGGGCCTGGACATGCCCTCCTTTGCCTCCCTCCCTTTTTGGAGGAGGTGGGCCTTGAGTTGGGCACTGAAGGCCGAGGAGGGTGTGAAAGAGGAGAGGCCTGAGCAGTGGCTGAGAGGTGAGAAGAGTGGGCATGATGGGGGCAGGGTGGTGAGGAGACGGGCTCAGGCCTGGCTGGGGCAGAGGGGTATGCGGGGGTGATGAAAGGACCACGTGACACAGGAGCAGATATGGGGCATGGAGCCGCCCATGGGTGGCCATGGATGCTAGCCACCAGCACCCAGGCCTGCAGCCAGGCCCCTGCAGCCCCAGCGGCCCCAGCAGTGTGGTGTGCCTGCCCCACGCCCTGAGTAGGAGCAGGGCCCAGTGCTGAGGTTGTTCCCTGGCCACTGTCCACCTCCAG
Seq C2 exon
AAATCCTTCCACAACCTGATGATGAGTGACAAGAAGTCAGAGCGCTTCTTCAAGGTGCTGCACGACCGCATGAAGCGGGCCCAGCAGGAGACCAAGTCCACGGTGGCAGTCAACATGAATGACCTGGGCAGCCAGCCACATGAGGACCGCGAGCCAGTCGACCCCACCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433:ENST00000374316:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGACCCAGACTGGT
R:
CTTTGGTGGTGGGGTCGACT
Band lengths:
345-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development