RnoINT0076759 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5701386-5703434:+
Coord C1 exon
chr20:5701386-5701555
Coord A exon
chr20:5701556-5703259
Coord C2 exon
chr20:5703260-5703434
Length
1704 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
CCCCCCTTGCCCTTCTCCAGAAG
3' ss Score
8.78
Exon sequences
Seq C1 exon
GCGTGGATCAGGACTGGTCCGCCATCGCAGCCACCCAGTGCCGGCTGGACAAGGAGGGGGCCACCAAGTTGGTGTGTGATCTCATCACCAGCACCAAGAACGAGAAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCGCCTGCTGGACGGGGGCAACACTGAGATCCAG
Seq A exon
GTGTGGGGATCAGGGCAGAAGCTCCAGCTCTGAGGGAGCTGCCTGCTCGGGAGGAGCTGTGGCGCCGGGGGCGGCCCACGGTGATTGCACATTCTGTACCTATGCCTGTGTCCGTGGCCCTGTGCCTGCCCTGCAGCCTCGGTCCTGCTCCCCTAGGTCTACTAGTCTGTCATTTTAGAGTGTGATCTTCCTTGCTTTCTCTCCTCCGTTATTCCAAAGCCCCAACTTTTCTAGCCCGCATTCATTCATTCATTCACTCATTCATTCTGTTCACTCATTCATTTATTCACTCATTCACCCACTCATTCTGTTTTCTCTTTCATTCATCTACCCACTCATTCGTTCACTCATTAATTCTATTCATTCATTCACTTGTTCATTGTTCATTCATTCACTCATTAATTCTATTTACTCATTCACTCATTCATTGTTCATTTATTTACTCATTCACTCATTCTGTTTCCACTTTCATTCATTCACTCATTCACTCACTCACTCACCCCCCTCCATTCACGTTTCCCAACCAGCACTTGACACCCAACCATGTCGCTGATGTAAGCAGCAAGCATCCAGCTCTGAAAAAGGAGACATGATCTGTGATCTCTCTCTCTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTGTGATCTCTTGATACCTGTGTTTCGTGGGCAGTGTCGGCACACTTTGGAAATCGGGATCCAAGACAGGAGATGAGGAATGCAGGGCACATAAGTTAAAAGAGGAGCAACAGGCCGGCCTCATGGCTTGGCCTTGCTGGCTCTGTCACTCAGGGTGCTGAGTCAGGCAGGGGGCTCCCAGGTTCAAGGCTTACCTGGACTACAGAGCAGTTTCAAGGCCGGCCTGGGCACTGTCCCTCAGCCTTGTCTTAGTAAAAAGAGAGACGAGGGGTGGTATAGGAGCCAGAGGCTGGTGGATCTCTGTGAGTTGGAGGCCAGCCTGGCTTTACATAGTGAGTTACAGGGCAGCCAGAGCTACAAAGACTGTCTCAAAACAAACAAAAACAACAGCAAAACAAAAATAACTAAGGAGAGAAAGAAGCCCCATTTAACTGGTGGGCGTGGTGAGGCTCCCCTGGCCTTCCCAATGCCCTAGGCTTCATCCCTGCAGGGATGGAGTGGCAAACATGCAACGGGCAAGCCTAGGTGACAGGGATGTAGACTAGGGTGATGCTGGAGCTGTGGGAAGAGTGTAGTGTGCAGGGCAGCCATGAAGGGGCCGGGGTGGGAGGGCCTTGGTCTTAGCAGCGCAGCGGGCTCTCAGGTGGCTTCCTGGTGCTGAGGGAGGTGGAGCCACTGAAGCATTCCTGCAGTGGGGAGACAGGATTTAAGTTTCCTAGGGGGATCCCTTTGGCTGCAGTGTGGAGCAGCTCCTGGAGCTGGTGGCCAGCAGGGCCTGGGCAGATGCAGCATGGCCCCCCAACATTGTAGTCCTGACAGGCTGGCCTTCCCCATCAACTGCTGGGCCCTGAAGCCCATCCTTAGCCTGTCTCAGAGCAAGCGTGTCTCCTAGACTTCCTCTGTAGGGCCAGTTTGATGCCTGCTTACCACGCCCTGGGGCCAGACTCAGGGCTGACACCGCTCTCTGCCCCCCTTGCCCTTCTCCAG
Seq C2 exon
AAGTCTTTCTACAACCTGATGACAAGTGACAAGAAGTCAGAGCGCTTCTTCAAAGTGCTGCATGACCGCATGAAGCGTGCCCAGCAGGAGACCAAGTCCACAGTTGCCGTCAACATGAGTGACCTGGGCAGCCAGCCTCGTGAGGACCGTGAGCCAGCAGACCCTACCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGGATCAGGACTGGTC
R:
CTTTGGTGGTAGGGTCTGCTG
Band lengths:
345-2049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]