GgaINT0141541 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4450467-4451789:-
Coord C1 exon
chr26:4451582-4451789
Coord A exon
chr26:4450908-4451581
Coord C2 exon
chr26:4450467-4450907
Length
674 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
TTTGTGCTTCCTCCTCCCAGAAA
3' ss Score
9.83
Exon sequences
Seq C1 exon
CACTACAGCATCACATCCGTCTGTGTCCTCTCCTGCAGGCCAGGACCAGGACTGGTCTGCTATTGCCGCTGTCCAGTGCCGGCTGGACCGAGAAGGAGCCACCAAGCTGGTGGCTGACCTCATCATGAACACCAAGAACGAGAAGATCTTCCAGGAGAGCATCCTGCTCGCCATTCGGCTGCTGGACGGGGGCAACACCGAGATCCAG
Seq A exon
GTGCCTGTGGTGGCCATGAGTCCATGGGATGGTTTATGTGTGCATTGTGAAGGTCCCAGTATGGGGAGGATGGGTGCAGAGCAATCCTCGGTCCCTGGTTGGCCTCTGGGCAGCAGACTTTGCCAACATTTGGATTGCATATGTTTGCTCACCATCTGGGGGAGGAACTACAGACATTTCTCTGTTTCCGAGTTTTCAGCTCGGTGACTGGCTGAAGCTCAGGGCTGGATGCCAGAAGGGGCAGGTTGTTGCTGACTGTTTCTGGAGTAATGCTGATGCCCTCTGCTGGGTATCACAAAAATGACTCAGAGTTGCAGCTCTCCGTTGATAACTTGTAGGTTATCTTGAATTCTTTATCACAGGGAAGCCAACAAATTGCACGTGCAAAAACCTGTGGGGTTCCAAGATTGCAGCTGCTGTAACTGCTGCTTGCTCTGTCCCTAGCCCTGCTGTGCATAAAGGAGAGGAATAGGCACAGGGCACGCTGCACCCCTGTAAATCCAGAAGATTGCAATGCCAAGGGCATGGAAAGTAAAGGATTTAGGGAGATGAAGGGAAGAGTCTGAAAACAGACCTTCCTGCTAGGCTATCCCGAGGTTAGGAGTGCCTCAGGCTACCAAACCATAGGGGTGGGCTGGGGTGGAGACCAACTGCTTTGTGCTTCCTCCTCCCAG
Seq C2 exon
AAATCATTTTACAACCTGATGACGAGCGACAAGAAGTCCGAGAAGTTCTTCAAAGTTTTGCACGACCGGATGAAGAAAGCTCAGCAAGAGACCAAGTCGACGGTGTCTGTGAACATGAGTGACATTGGGAACAAACCTCGTGAGGACAAAGATGAGCCTGACCCTGGCACCAAAGGTATGGGGCCGTGTCCTCCCAGAAAGGCCAATGCCTGCCTCGTAGGACAGCCTGATGCTAATGGGGTTGGGTTGCCCATAGGACGAGGAGAGACCTTCATGATGCCCGGCACCCCCTCCCGATACCCGCTGGCCTTGGGGTTTCGGAAGGGCCATGATACCGGGGAGCAGGGGCAGAACAATGAGATGGGGGTGACGGTCCTGATTATGGAGCCCATCCTGCGATTCCTCCAACTGCTGTGTGAGAACCACAACCGAGACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.8=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACTGGTCTGCTATTGCC
R:
CATACCTTTGGTGCCAGGGTC
Band lengths:
342-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]