DreINT0084847 @ danRer10
Intron Retention
Gene
ENSDARG00000069117 | kcnh5b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5b [Source:ZFIN;Acc:ZDB-GENE-090319-1]
Coordinates
chr13:37244155-37247134:-
Coord C1 exon
chr13:37247006-37247134
Coord A exon
chr13:37244274-37247005
Coord C2 exon
chr13:37244155-37244273
Length
2732 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
AGTACGTAAATATCTTTTAGGTT
3' ss Score
6.18
Exon sequences
Seq C1 exon
GAACCCCGGTTTGGTTCTACATGCAGATAGCGCCAATCCGCAATGAAAATGACAAAGTGGTTCTGTTCCTGTGTACATTTAAGGACATCACCGTCTTTAAACAGCCTATTGAAGATGAAAGCACCCGGG
Seq A exon
GTGAGTTTAACACCCACACGCATACATAAATATATACATATGCTGTTGAAACAGTACACTTGTTATGTCAGCCATGCATAGATTTCTGTTTATGAGTTGCATAAATAGTGTGTTTGTTTAATATCATACAGATTATTTTGAGGCCGAAATTTAAGCAGACATGCCAATACTGCTTGTTGTACTTGAGCTTTTTCTGACAGATGAACACTTCCTCTAGTGTGCTCAAGTCATATAAATAAACATTTGTTTATGATCGGCAAGCATTGCCAGGTTTTTTTTTTTTTGGCATTCATGCAGAAGTGTTATTTTGTTGCACTTGCGCGTGTGTGTGTGTTTGATTGTTTGTTGGCGAGAGCTTGTTTATTGGGCTGAAAAATGTTACATAGAGTCTGATTCCAACACTCTCAATAGTGCTGGCAATAGCCATTGTGAATTTGTGAAACTTGTGCTAAACTAGTCTGTGTTCCCAGCACAAAATAAAATTAATTAAAAAAGGTAATCGTGACTTACAAGGCAGGCTTTGTGATATAACATCTCACACTTTTTGAAAATCTTTATTGTTAGAAAAAAAGAATTAAAGGTCAGAATTGTGAGAAAGAAAGGAGGACATTACAAGATAAGCCTTGACAATTGCATTTCTAAGAATGAAAGTAAAAAATGTGAGATGGAAAATCCTAATTGAGAGGGTATCCGCGGGTCTTAAAGGTTCAGGACACACTGGAGAACTTTTTTTTTATATATATATTAACAGATTTGTGTGTGTTGAGCATCAGTTAAGACAATGTTAGCACCTGTCAGCTGTAATTGTGGGGAAAACTGGATGATTTTGAGCTTTTGTCAGCTAATTTCAGCTTCCGGGTTTAAAATGATTTTTGGGGCGGGACCAAAATCGGCGACGTAGCGCAGTACTGCAAGTGCAATGATGACACGTCGGTTTCTCATTATTATTCATAGCGGAGTTTTCTTATCCTATGAGAAGAGCCGGCTGCTTAATTATTCATGAGACCTGCCAGACCTGCCAGAGTCAAGCCCGAGCTGTGAGACACGGACCCAAGCACACAGTTTTTAGCCGTTCATGAAGGCTCATATGCGTTTGTTTCCATGATCCACGGGGTTTGTTGCATGTTTTCCCCTGCGATCTTGTCAGGGCCGATCATACAGCAAAGCTGTGTGTGTGTGCTGCTAGCATATTTGTCGGGAGAGCAGCGCGAGAATTAGAGAATGGCGGACGCTGTCTTTTATCAGGAGTTCGTTCACCATCAGACACATCACTGTGCTGCTGTGTTTGCCTAAATCCTCCAGATTACCAGCAGGGCTAATGGTTAAAATAGACAGGTCAGGAGACCTGCTGCACTGAGTCTGCTGGATACAGGGATTGAGGGAGAAGTCCTCATTTATAGGGTTTACATGAACACACTTATCTTTATAATGATATAAATTGTGGTTATGTGTATATGAAATTACGAATAACAAATGTAGCAGGGCATCTTCATTTCTTTGCATTTTAACTTTGTAAACTTTAAACTAATGCGTCTCCCCACGGTTTGTCTTAATTTGTGAGCTAATTGACAACAACAGTTGTTCGCTTACGTTCTCCCCTGCTGGCTACGCCCACTCCTGCCCGATGCTCGCGGAGCTCCACGCCCATTAATCATGCATCTTTTGAAAAAATTCTGTAGTAGACTCTAACTGAAAGTGGGGGGTGTCATGGCCCTTTAAAAAGTCTTAATGTCTTAAGCTTCAAAAACAAAATTTTGTTTTGCTGAAATATTGTCTTGTGGGTCTGAAATCATTTTTAAAAAGTCTTCATTTTTCTATGTGCAAGTAAAGCTGCTCGATCATACTGACACCCCATTACCAATAACCCATCTCAAAACCTTTTTTTTTAATATTTTTTTTTATATAAGTTATATAAGTTTTATTTATATAAGTTTTTTATTGCAAAGAGATACAGTTTACAATAGCTGTTAGACATTTATTTCAGCAAATTCACCTAAATAAATTCTTTAACCAGGCAGAGAAAACTAAAGCAACACATCCCTTTATCTTATATTAATAGAAATACAATTTACAGAATCAACTAGGCCATTAGAAAAAAATTTGTGTTTACCCCTGTATAAGTCTAAATTTTAATCTTAATGGTCTTAAAAAGTCTTAAATTTGGCTTGAAGAAACCTGCAGAATCCCTGGAGAGAAGAAAACTAAAAAAATAAATAAATAAATAAAAAATAGATAAATAAATAAATAAAAATCTGAAATGTAAACATAAAATCTGAATTTTGGAAATTATTTCTTAAAGTTTAAAGAAAAAAGTCAATGCTGGGTTGGAATTGTGAGGTATCTAAAGTGAGAGTCAAGTCATTTTCCAAAAACATTTCAAATATACTTAAAGTTTTTATTCATCAGAGATTAGAAAAGCTTCATGTTTTAGGTAGAAATAAGAAGTGTTTTCAACATTGATGACAAATGTTTTTTGAGCACCAAATCAGCATATTAGGAGGAATTCTAGAGTATCATGTACATCATTTGTAGCATACTAGCTTAAAGATATCTTAAAAACGAGCAATACTGATACTAACATCTAAAAAACATTATTTAATATCATGGTACTTTTAAAATTTTGCTTTAAAACGTTTATTAAAGCAAAATACTAAATTGTGTTTCCATTGTACAGTTTTTTTTAGGGTAAAATGTATTATGTGTCTTTCACTCAGTACGTAAATATCTTTTAG
Seq C2 exon
GTTGGACCAAGTTTGCACGTTTGACTCGAGCGTTGACCAACAGCAAAAGCACCATTCAGCAGATCACGCCTGTCAGCAGAACCGACGTCACGTCACACAAACCCTCCAGACTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069117:ENSDART00000138934:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]