RnoINT0077770 @ rn6
Intron Retention
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:98102728-98113376:-
Coord C1 exon
chr6:98113248-98113376
Coord A exon
chr6:98102844-98113247
Coord C2 exon
chr6:98102728-98102843
Length
10404 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TCTCTCCTCATCCTTTAAAGGTT
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTACCCCCGTTTGGTTTTACATGCAAATTGCACCAATAAGAAACGAACACGAGAAGGTGGTCTTGTTCCTGTGTACGTTCAAGGATATCACGCTGTTCAAACAGCCCATAGAGGATGACTCAACAAAAG
Seq A exon
GTAATTTCCAAAACAGTTTCCATGCCCGAGAAGTTGGTGACCTTTTACTTGCCACCACCACCACCAACACCATCACCTCCTCCTCCTTCTCTCCCTCCTCTTCTTCTTTGTAAAACACCAAATCTATATTTACATCCACACATAATGAATAACTTTAAGCTGAAACATATAAAAAAAGCATGTCCACTGACAACTTAAGTATCAACAATTAAAAGAAATCAAGCTGGAATGAAATAAATAAATTAACAAAAATCCAATGAATTGTACCTCTTATCACACGTATGGTTGCCTCAAAGGGAAAGACACACAAAGCCAGTAGTATCCTGGGAGTTATTACTGATGGTAAGAACACACTGTGACGTACAAAGGGCTGATTACAAACAAACAAATAAACAAACAAAAGACTGACAGACAAAGACAAACCTGGATTTTTTTCTTTTCCTTTTCTCCATCTTTATTAAATTGGGTATTTCTTATTTACATTTCAATTGTTATTACCTTTCCCAGTTTCCAGGCAAAACATCCCCCTAACTCCTACCCCTCCCCTTCTATGTGGGTTTTCCCCTCGCCATCCTCCCCCCATTACCGCCCTCCCCCCAACAATCCCGTTCACTGGGAGTCCAGCCTTGGCAGGACCAAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGAGGTTGGAGCCCAGGGTCAGTCCATGTATAGTCTTTGGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGAAAACCTGGAATTTTTATGCACTTAGAAAATGTAGCTAGAGAAATCGGAAAGCCCCCACATTTCAGCATTACACATACTGACTTGTTTTCTAACAGATTTGGTGATGTTTTTAAAATATAGGTTTAATTCTGCCCCCTATTACATATATACCCCCCAAGATGTACGTGTATTGCCTCTGAGTTTTCTGTACACTCCCTGCATTCAGGCAAAGATTGAGTCAATCATCTTGCAAATGTATTACTCTTCAAAAATAGGCTATAAAAGTGCAGATCCTAAAAGAACAGTCTAGATTATGTACATACGGCTCAGCTTGTGGATGGGAACAGGGCCTCGTATACATGTTCCTGATTCAAAAGCACTTCTGCAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACAGGAGGTAAGACTTCTCCCAAGGACCCCTCATGGTGCACAGTGAAAGTGGGATGAAGTCAGGGTTCTTGGAGCGCTTCACCCTTTTGTCCAATCTAGGAGTATGGGGCAGAGAAATTAAAAAAAAAAATAGGATGCGTGGGTGTCTACAGCATATTTTCTTTCCCTGTCTCCCTCTCCTGCCAGGTCTACCCATGGCCCTTAGTCTTCTCAACATTCATCCTAGTGAAGTGTGGGGAGGAATTCCATAGAGCGTGGTTAATTTGGGAACAGCCTGATTGGCATTTCGGCACCCTGTACCCAGGGAGCTTTAGAGGGAAGGGATTACACAAACCCAGGACTGATTTTGCTGAGGTCTTACTGGAGAGCTGTTGATAATTTGATGGAGTTTTTTTGTTCAATCAACTGAGTCTCGCCGGCTGATTACATTCAGTTTACTTCTCAGCTTCTATTTATTTCAGTTGTATGTTCTCTTGAGTGGAAGTTGTGTAATTTTGTCATAACGAGAGTGGCTGGCTCAGTGCAAGCCTCCCAAGTGGAGCGTTGTTGACGGCGGCATCCAGAGACCCGGCTATGGAAACCTAGAGCACTCTTTCTTCTTTCCAATTCATTTTATTCCCGATTTAATTTCTCCATTTAGGTTTAAATTAGAAGCTGGTGTCATATAAATGGAGATTTTTAAATTCATTTAGAAATAGGTTTTATAAAATGTTATTTTTAAGAACCTCTTAGGCGACCAAAAGGGAATGCCTGCCTTTATGCAGTTGGCAAACGCTCCTTTCCCTTCCTTCTAAAAGAAAAGAAAAGAAAAACCAGCACAGAGCTTTAAGCTTTCCAACTGCAACTGTAATTACAGAAAATGACATTAATTTATCCCTTGCAGGTGAGTCTAAATACATAATATTGCATCTATTCACATTTTGTTAGTACCAAATTAAAAGGAGAAACTTTATACTGTGCCAGGCATTGAAAATAATGCCTGAACAAATTAATTTATATGTCTCTGAAATTCTAGACTCTATGAAATCATTTTCTGGAAGATCAAGTAAAATATCTAATTTAGCGCCTAGATCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTGTATAGCCCAGACAAACATACAGCTCAGTATTCTGCTGTGTCAGTCATCCAAATGCTGGAATTCCAGGCATGCGCCATCACAACCAGCTAATACTACTTTTAAAAAATTAAAACATACTTCGAATCATCTTTGTACTTAATGTTGATTTATTTCTTTGAAACTTCATGGTACTTCAGACATAGGCTAAAGAAAGATTTTTTTCTGAGTTGTATATGGAACACTCACCATATATACTATATTCTGAGCTATACTTTTTTTTTTATCAATTTAAACAAATATATACCTTTGAAAATGTATCCCATGTGCTGGGGATTTAGCTCAGTGGTAGAGCACTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAAAAAAAAAAGACCCAAAAAAAAAAAAAAAGAAAATGTATCCCAGGCCATAATGGAATCAAATTAGAATTCAATAATTGAAAGATGCTTGGAAAACTCTGCAACAATTTGGAAGTTAAAGAACACATTGTTAAACAATCTATGCGTGAAATAATCTTAAGTAAAAAATATTTTGAACTAAATCAAAATTTAGACCTTTCAAGTTTGTGGAAGAGAGTAAAGGCACTACTTAGAGGAATATATATATATATATATATATATATATATATATATATATATACAGATATATGTATATATATATGACAAAAGAAAATGTCTTAAAAAAAACAGTAGCCTAGTTTCCATCTTAAGAAGCTAGGTAAAGAAGAGAATGTTAAACCAAAGCAAGCGGAGGACAAGACATTCTAAACTGTATGGGAGAAATCACTGAAAAACAGGACAACGTTGGGGAAAACCCACCAAAACTCAAGGCTAACTCTTATAATGAAAATACCATTATAGTTACCCTCTATCTCTGATAACCAAGAAAAAAGAGGGAAGACACAAACTGCCAGTGCAGAAAATGAAAAGCCTATGTCCACTTATGCTGTGGCTACTGAAGCTTAGACAATGATCACCCTGTGGTCACCATTGATGACTTACAAGAAATAGACCACTCTCATGAAACAGAAAATCTTAATGCCTCATCACCATTAAACACTTAAGCAGTAAAGAGTAATTGACCCAAACCAAGGAAATAGATGGAATAGTTTCATCAGGATACCCTAATAAATGCTGAAGGAAGATATTTCTCCTTTTCCTTCAGGATTTTACACACCCATATAAGATAGCCACCATTCCCGTCTTCCAAGTTCTCCTCCCCTCCCCTCAAATGCCTCCCTCCCTAAATGGATGATTCTAATCAGTCTCCCAACACATCAAGGGTCAAGGAACATGTTGGAAGAAGAGGCAGAAAGAACACAAGAGCTGAGGGATGGGGAAGAGGTCTGTGAACTGCTGCCTTCTGGACATGCCTGTTGTACACATGTGCCCACAACATTTCTGGGGTTGCCTGCCTATCTTATAGGTCTCTTTCAGAATGCAAAAGCAGAGGGAAGTCTCCCAACTCATGTGAGGAAGACAGTACTGCTCTGATACCAAATCCAGGAAAGACATTACAGAAAAAGGAAATGATAGATGAATGTTTCACTCTTAACATGTGATCATCCACAAAACTGAATCCATAAAGTATACAAGGAATTATGCAGGACAATCAAATGAGTTCAGTCTTCAAAAAGCAATTCTCCAAATCCATCCTATCAGTGAGTTGGTTAAAAACAAAACAAAACAAAAAAACCATATGATCCCTTCAGTTGGCATAGAAAAAGCATTTGAAAAATTCAAAACTCACTCATAAAAAGCATCTGAAAAAAATTCAACATTCATTCATGATTTAAAAATCCTTAGAAAAGTAGGAACAGGGGGATGATCTTCTATATTCTCATGCAAACCTTGTGGTTAACAGTGAACTATATGCTTAGGTGAGGTGTTTAAAACGTTAAAGATAAAAGAGTTGATAGGTAATTGATAACCTAAAACATTCTTCAGGCGACTTTTGATGTCTTCACACATGAATGGCTGTCATCTTTGAGTGAAGAGTTCTCATATCCTAGTTTCAGTCCAGAATATGCATATATTTATATTAGAGGCGTGTTTTTGTTCCGATTTACTCTATGTAATTTATGACACAGTTGAAGCTGCCCAAGGACAGGCAATGCTTCTGCACCATTTTGACCTGCTGAACCTTAGTGGTAATTAGTAAGTTTATATTTACGGGACCTGGAAGTTGGCAGCATTCTGGCATGAACTGGGGTGGGGACTTATAGAGGTAATTGAAGACCTGACTTATTTCTGAAGTGGATGCCTCTCCGTTCTCCTATGCTCTCTTTCATCACTCTGCATCCCCTGTATCAGTGTGCTTGTAAGACACAGTCTCTTTTGAGTTGAACTATCTCTTTTTATAAATTATTTTTGAGTGACCCCAGATGGATCAGACCACTTGATCGTTGGACAGTGAGCTCAATAAGTACGCGAAATAATAATCCTAGGAACAGTAATGGTATAAAATGCCCTTTTCTAGTGCCAGATATTCTAGAAGATGGGTTAATTTCAAAATAATTTTTGTTCCGAGACTCCCATATGCCTTCTCTCTAGCTAGCGGATTACTGAAAAGGCATTGCGTAATGCGGCTGTGAATGCTGCATACGAAGTACTTTCTATTATTCATGTGAACTGTACATTTAACATGAAAAATTCAAAAGACATGAAATACTTACACCATTAAGTCATCATCCTACTGTATCTTTGAAGCTAGTGATACAGGAAGAGGAGAACATTTATAGAAGCTTTGTAAAATAGTACATGTTTCTATTTTAAAGACAAAGAAGAAATTAAACCTTTTGGATATAGAGGACATGCAATTTTATTATAATTATCATAATATCAAAGTGATTTGTGTTTAGAATATTGAATAAAAAATAGTGATGTTGCCTTTGATGCAGCCTTTGGCCTCACAGTAACTTAATACAAACTTTTTCATGATCTTTACAAGCGTATCCTATTCTTCTAACCTTACTTTTATCTGTTTATTTTCCCAACAAAAAGTTGAACTGAGACTATTTCTGGGGATGTAGGAGTGGCCCCTTCTCTATTTTGCTCTTTTTTTTCTTTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCCTGGTCCCTTCTCTAATATTCCGGTGAGGAAGACAAACAAAATTGTAGAAGCTTTCTTCCAAATGCCCCTGTCTTCTTAGTGATTAACTGAGTATAAGAATAGAAAAGGACACAAGAGAGGAGTTAAGAGAGTGAAGCAGCCATTAGAAAGGGGAGACACAGGACCACTGGGCAGCATGGAGGCCCTCTGAGGCTCTTTGTCTAGAATTTCACTAGTGTCCATGGTCCTCATCCTGTTCTCTACTTTTGTCCAGTCAAAATGGAGATGAGCAGTGGGTAAAAGTTGGTTTAGTTGAAGTTCAGTTTTGATTAGGTGCAAGGAAAGGGATTTTCAAAAGGCGTATTGATTAGACGAGGGCCTCTAGCCTTTGAAGATCTGCCAAATTTGCTGGTTTGCATTCATACTGATCTCTTGTTTATATCGCCAACCCCACCCCCTCACACACACCAAGAAACTCAGACAAATGGTTAAAAGCCTTGAAGAAATGGACTCTGAATTTAGCTTCTGAATCAGATCAGACACTGACTGTGGTGGTTAAGGCCATGGCTGCAGTAATTGTTAGCATTCTGTCTAAGCCCCACCACACAGTGACCTGGCAACAGCCAGGTCATCCTGGCTCTATGAAAGGGGCTTCTTGCCTTGTCCTCACTCTTTTGCACTCTCTTAATCTCTCCCCCCTTTGTCCCTTCTCTCCCTATTCCCCTCCCTCCTCTCTCTCATGGCTGGCCTCTACTCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTTACTCTACCCCCACTACCCTCTCAACTCCCCTCCCCATGCCCTAAACAGAGGCAACTGCCTCTGTGACTTCCTTTCATTTTTAAGATTAGGCAGTCCATGACAAAGAGGTTAATTGCAACCCAATAGAGCTAAACTAATGTTTTATTAAGAAGGAGTTGGCAGCCTGAGCTTTTAAGAGAACAAATGTTCTCATAATGCCATGAACAACTTACAGTGCAAGCATTTTACTCGTCATAGACAACTGACTGTTCAGATTACCCCGTATCGACCATGTCTAAGTAACATCAGCGAACTGCTGAGCTGTCAGGGGCACAGTTAGATTTCTGTAGGGAGGTGGGTGGATGCAGTCCTGGGGAGAAGTAAGAACTGCTGATGAGTCTTTTTGCTTTGACCTAGACAGTGTGATTGTGTGACTCTTTTCAAAGTTTGACTGTAACGTTGGGGTTGGGGAAAGATTAAATAGACTCACATTGTCTGGAGGCAGATCCGGAGCACAAAAGGATTGGCATAAGAAGACTCAACAGGGCGTGATTCACAGTAGCGGAAAGGCTGCAGACTTCTTGAGCATGTGTCTGTGTATAGTATGCGTCATCAAGGAGAAACGAGTGCCTAATTCTTAGAGATAGTGGGGAGCAGGTAAGAGTGAGGTACGATGAGGAACAGGCAAGAGTGAGGTCCCATGGTGAGCAAGCGAGAGGGGAAGCTTCAGGTTCTTATGTTTGGTGTGGCTTTTATTGGTTTCAGGTGAAGTGTGTGGGAAAGTGGTGGGGGTAAGGAGGTATAGAAGTCTTCAGAAAAATGCTAATGTTAGAGCATTAGAGCAGAGGGCTGCCAGAGGGCCCTGGCCAGTGCACACAGGAGCAGTGGTTCCTGCTTTTTCACTAATTTACATATAAAAGGAGCACACTTTGGCTTGGCTTTGGTTCTCCAACTTATGGGCCAAGTTGATAGCAAACTCCTACTGGATGACTCCCTGACAATCGACCTTGACTTTGGTTTCTCCGTGCTAGAACTGCCTCCTCACCTAGCCCTGCCTTTCTTTCTCAGCTAGTGGTTCCTCAAGTTCTTTCTGAAGAGTAGGAGCCACTCTACCTTCTCCGTTCCACAGTTCTTCCCTAATGTCATGAATCATATTGACATGCGCCAAAAGCTGAGCCTAGCGCCTTTGCTGCATTTTCATTGTATTTAAGGCAAAATGTGTGCTAATCTGTTTAACTTTTTCACTCAGTGCTTCACTTATTCTATCAAAATGCAATTACTGCCCTCTACACGCTATGTTGATCAGATTGTATATAGTTGTGCACAGACACATGGAAACCAGTGTTTTCTGAGTATTTAAATTAGGATTTACTGCTTCCTTATTCTGAAATGCAGCAGCATCAGTGACGATAGCTTTCATGGCTGTGTTCTTCCTTCCTCACATGCCTTATTGTCGATGTGGTTGTAGGAGATGAGCAAAAGTTAACATTCTGAAGGCTTGCCCTCTTGTTCGGTTTATTACACACATTCTTCCCGTATTTCTCCTTTGTTCCCAAAATATTTTTCCAGGCAAACTTTATTGTATACACAGAATGCAAATGATTTTCTCTTTTGACCCTACTCAGATGTACAGAGATCTTGAATCATCTTTTTTTTTTTAAAGAAACGTGAGCCTTCAGGAAGAAAAACGATGAGCTGAGAAGTTTCTAGAAATAGCCAATGCAACTATAATACTCAGTTACTGTAAGATGAGGAATTATCAATATATTTTAGCATGTTGATGACTGAAATAGTTGCAGTCATCAAAGGGCACCCTCATTATTTACACCCAATCCAGTAAACTGACCAAGGCCCACTATAGGAACACATAAGTGGGCTTTAGTCTTAAGGAAAATTGGATTAGTCAGTCACCTTTTGTTAACCTACCGACAGCTTTAGTGCCACTATGAAGAGATGAACTTTAATTTACCCAAAGTAAACGATGTCTGCATTGATGTTGTTACGTCACATGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCCATGGTATGAAGGAGGGTATCTCAGGTGGCTCTGGGAAGCTTGCAGAATCAAGTAATCCTTCAATTGAGTCCGAACTGCCATTAGCCAGATAGAATTCTAGACAGGCAGGACGGGTGTAATATAGAAAAGAATGGGATATTATAGTGAGTAAAAGGAACTCTGGAAGACTTGACTACATTTTGAATTGTTTTTAAATTAATTTTCTGTTGGTTCATTAAGGTTGGAAACAGTAAGAGGAGATGACAGGTGATAGATGTGGTACAAATCCCTGTGGTCAGAAGCTAATGACCTCTCTTCCAAGGGCTCACTGTGCTATCCCGGAAGTTTCCAGGTTGATATGGAAGGTTGAAACAGGGGAATGGGAGCTCTGGTCTGTGCTTTAGAATCTCAGCAGCGTGTGGATGTGCTCTTAGGGGGTTGCCACCTGTCCGCAATTACACAGGCTGTACTGTTTGACATCTAAGGATGGAAGGCATTCATTTTGAAAGATATTTATTCACAAATTATAAACTAGAAGGCTTAGAAGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCATGAGCGGTGTTAAGTGGAGAGCTGATGGTGTCTTTGTTGCCTCATTGGGAAAGCAGAACATTGTACAGAACCTTGGGTTTCAGGTAAGGCTGTCTCCAACCTGACTCTAAGTGCCAGTCACTAGGATAAGGTCTGTTACTAAAGAAGAAAACAAGACTTTCCACCCAGGGATGTCAGCTTACTTCTCACCCAATCTGTGAACACACAGAAGGAGCAAAATTGGTGGGAGAAGTTCTAAGCCTGAATAATCAGGCTAGTAGTAAAGTCCGTGTTACCTGTACTCTGCGATTTGACAGGCATTAGTCTTCTGTAGGCCCGGGTTTTTTCAGTGTTCATTGAATCATCTGAAATTTCATCAAGCCACTACATTCAGCCCTTTTGACCAGCTGCAGTTTTCATTTTTAAGGAGCAGATTGGAGACTATCCCGTCAGTGGGTAATACTGCGGAAATGCTGAAATGGCTTTAAACAAATCTTCAATAGAGCTTAGCTTTTGATCTAGCTAGAGAAAGGAGAGTCGAGACAGGGCCAGAATTTTCTCTATTTGCTCACATCTCATTGGTATTTCTTTGAAATTAATGATTTTAATAATGGCAATTTGAGACCCCAGAAGAAATTTTCTTCCCATTAAATTCGCATTCCTTTTTCCCAAAAGCAACTTCTCTTTCAGAAAATGTGATTAGGGCTTTAGATATTCAAAGCATAACTTTTTAGATATCAGTGCAATTGTTAATGAGGGAAATAACGTTTGTTATGCTACAAGGAAGGTAGAATGTGCGATAAGAACCACAATATGGGAGAGCGGTTGGAACTGAGCTATTCCTCCTGTACAAATCTGTGTACAACACCCGGAAGAACTGTTTTCATTAGGGTGATAGTAGCTGCTCTAACAAACAATAATAATGTATTAATGTTATGTGTTATTTTTATTAATAAGGAACAACATTTATTTGATGCAGGAGAAGCCTATTTTTTGTTCATATAATAATCCAAAGCAAGTGGCCCTGGCTGGCATCCTTCTGCACAGCTATCCAGTGTATTGGCCTACGGTTACCCTCAGGTCTTGCCCTTTGCCTCCAGCTGGTAGAAGGGGAAGAAACCCCTTGATATCAGCTTGCTTCTGAAATAGAGATACGGATGTGGCACCATGTTTTTGCTTACATTCCATTAGTGAGATCTAGGGACTTGGAACACACAGATGCGTGGCTAGGCAGCCATTTTTCCTTAGCAAACCCATACCAAGCAAACAGGACCACAGTTTATTTTTAAACCCAGTATCTACCTTGTCTACAGGGACTACATAATAGATCTGAGAAAGGCACAAGTGCTACAAAGTGCCACAAAGATTAGAATGTACATCATTTTAGTCACACTTCAAATATATGATGGGTGTTTACTTAGGAATAAAACTGACACTTTTCAGTTTTCATGGACAGCATGTGATTGGCTGCAATCCTTTGACATTCTGAGAGAATGTGGGGTTTTCAATTCACTGTATGTCAATAACCAAAACTCTCTCCTCATCCTTTAAAG
Seq C2 exon
GTTGGACGAAATTTGCCCGGTTGACACGGGCTTTGACAAACAGCCGGAGTGTGTTACAGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAACATTCAAGACTGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542:ENSRNOT00000013275:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.2=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]