DreINT0091309 @ danRer10
Intron Retention
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32280748-32281380:-
Coord C1 exon
chr5:32281312-32281380
Coord A exon
chr5:32280833-32281311
Coord C2 exon
chr5:32280748-32280832
Length
479 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
AACATGTTTTTTTCTCTAAGGTG
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTCTTGGATCTACATGAAAATAAGCTCACATCACTTCCAGATGAGATCGGACAGCTTTCGTCCTTGCAG
Seq A exon
GTATATCTATTTTATAAGATCAAAGTTCTGAATTGTACAATCTAAAAACAGAATAATATGCTAATAGAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATAGATAAGTTAACAGCAGTTTTTTACTGTGCACCAACTCACCATATCTGGATGATTTCTGAAAAATTGGGATACAACATAATTTTTTTAAATTATCAAAAGAAAATTAAAAAAATACATATTTTATTAATACTTTTATTGCATTAATTGAATGCAGCCTTGGTAAGCAGAAGATTTATTTGTTCATAAATATTACAATGTTATCAACCTCATTGTTAATAATCCAACAATATCAACTGAATTGCTGTGTATGTTTTGTAATAACTAGAGTACTTTATATTTGTTGCTTTCATAAAACATGTTTTTTTCTCTAAG
Seq C2 exon
GTGCTAAATGCAGAGAAAAACCAGATCAAACAGCTGCCAGACACTATAGGAGGTCTTCTGCATCTACAGACACTTAATGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683:ENSDART00000085769:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(53.7=100)
A:
NA
C2:
PF127992=LRR_4=PD(31.7=44.8),PF138551=LRR_8=PU(16.1=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]