RnoINT0087336 @ rn6
Intron Retention
Gene
ENSRNOG00000022312 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:RGD Symbol;Acc:1564403]
Coordinates
chr3:12002245-12003365:-
Coord C1 exon
chr3:12003297-12003365
Coord A exon
chr3:12002330-12003296
Coord C2 exon
chr3:12002245-12002329
Length
967 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTCACTGTTCTCTTTCTTAGGTA
3' ss Score
11.18
Exon sequences
Seq C1 exon
GTTCTGGATCTCCATGACAACCAGCTGACAGCCCTTCCTGACGATATTGGGCAGCTGACAGCCCTGCAG
Seq A exon
GTAAGGCTGCAGGGCATAGACCTCTGTAATGAGGGGACATCCTGATATGCTGTCAGCGGTGAGCCCAGCTGTGCAGCCTTCACTGTCACAGCCTGGCTGTGAGCCTTCCAGGATTCAGCATGTACCCCATTGTACTCCTTTATATATCATGGCTTCATAGCTTTAGCTTCTTCCCCAAAAAGACAAATACCCAGACAAATGCCTCTATCTTAAAAACAGATTCCAGGGACTGTAGAGATGGCTCAGTGGTTAAGAACGCTGGCTACTCTTACACAGAACCCTGGTTGGGTTCCCAGCAACTACATGGCAGCTCACAATCATCTCTTACTCCAGTTTCAGAACATCTAGTGCCCTCTTCTGGCCTCCACAGGTACTGCACACAGGTGGTGCACTTACGTGTGGGCAACACTCTCATACACATAAAACTAAAATTTTAAATTTTTTTTTCCTTTTTTCGGAGCTGGGGACAGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTCTACTACTGAGCTAAATCCCCAACCCCAATTTTTTTTTTTAAAGGACAAATCCTTTACTCCCCAGGCTTCCTGATGTTTTGTCTGTAGCTGCTTCTGCCCTGTCTGAGTGCTTGATTTAAGGCTAGCCCCGAGCCAGACCTCCCCATTGCTCAACAGATAACCATATCACAGCCCTCACACCTTTCTCTCTCCACACTGGTTCATGTAATTCCTAGGCATCCTGTGTTAGTATCCATGTTGAGCCCTCAAGTAGGAAGGAGTGTGTCCAAGGGCTTGGACGCGTGACTTAACCTCTGTAAGGCTCAGTTTTCTCATGTCTTAAGTGGGACCATGGCAACCGATTCCTCCCTCTGAGGGCTGCTGGGAGAAGTAAGAACATAGTCAGTGCCTGGTGGACCGGGGCTGGGCGTGCAGATAGCCACTGCTGCCCCGAGGGGCGCTGTGTCACTGTTCTCTTTCTTAG
Seq C2 exon
GTATTGAATGTAGAAAGGAATCAACTGACACACCTCCCACGCTCTGTTGGGAACCTGCTGCAGCTCCAGACCCTCAACGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022312:ENSRNOT00000060186:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(55.0=100)
A:
NA
C2:
PF127992=LRR_4=PD(37.5=51.7),PF127992=LRR_4=PU(15.4=27.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]