GgaINT0124710 @ galGal3
Intron Retention
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1945121-1946079:-
Coord C1 exon
chr17:1946011-1946079
Coord A exon
chr17:1945206-1946010
Coord C2 exon
chr17:1945121-1945205
Length
805 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTTTTCTGTTAATATCTTAGGTC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTTCTAGATCTGCATGACAACCAGCTGGCATCGCTTCCTGCTGATATTGGTCAGCTGACATCTCTTCAG
Seq A exon
GTAAAGGATCTGCTGTATCCCAAGTGTCTGTAAATGCCATGTTAGTTAGTTAGTACTGCTGTTTGGTTTTTAGTTAAGTACAATTCAGATAGGGTCCTCAGGGTGTCAGATCTGTGTCACTGATGTGACTGTCGCTGTGCTGAGCTGGCTTGTCAGGAAGAGAGGTCAGGAGAAGAGTGTACTGAATTCTATAGTCTCTGCTTAGTGCAAGCAGTGTTGCTCCAAATAGCTCACACTGCCAAGCGAGGGCTGTGAGTGAGTAGAGCTGCAGTTTGCAATCCAGCTAATTTCCTAAAACGTTCAGGTTTTAGCATTCTCCCTGGTGGGATTTCACTCAGAGGACTCAATGCAGTGTGTCATAGTGCATTTCAGATGGTTCCTTCTGCTTTGGGGTGCAGCTCTGGATACATATCACTGTTCAGTCACCTGGTTCCTGTGTGAGCTGGGGCAGAGTGGCTGGGGAGGCAAGTATGCTTGGCTTTCCAGTTCATGCACCTGCATTTAGCACCTGCTTTGGCTGTTGTTTGCAGATGCATGCAGTAGCTAGATGTCTACTACTGTCAGGGTGTCTAGGAAATCAACTCTGTGTTTTCAGCCCATGGATCCAAACAGTATTAACAGATATACATTTTCCCCTGGCAGATGATGAAGGACTCATTGTAAAAGCATTTTTGTTTTTATAACTTAGAAAACTACTTTTAAATCACCTTCTGGGGCTGCAGAATAGTCCCAGCAGCATCGGTATAGTGAAGACCTGAGACTTGTGTAAAGAATATTTTGATTATCTTTTCTGTTAATATCTTAG
Seq C2 exon
GTCCTAAACCTTGAAAGGAATCTCTTAAAATGTCTTCCACAATCTATAGGGGATCTTGCCCAGCTCCAGGTCCTCAATGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819:ENSGALT00000014334:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(50.0=100)
A:
NA
C2:
PF127992=LRR_4=PD(36.4=55.2),PF127992=LRR_4=PU(20.0=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]