MmuINT0093487 @ mm10
Intron Retention
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32954202-32955249:-
Coord C1 exon
chr2:32955181-32955249
Coord A exon
chr2:32954287-32955180
Coord C2 exon
chr2:32954202-32954286
Length
894 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTCACTGTTGTCTTTCTTAGGTA
3' ss Score
11.13
Exon sequences
Seq C1 exon
GTTCTGGATCTCCATGAGAACCAGCTGACAGCCCTTCCTGATGACATGGGGCAGCTGACAGTCCTGCAG
Seq A exon
GTAAGGCTGCAGGGCATAGACTTCTATAATGAAGGGAGGTTCTGATGTACAGTCAGCAGTGGGCCCCGCCCCAGCTGTGCGCAGTGTGGGTGCCGCATGACCGTGACAGTCTTCCAGGACCCGGCTTGTACTCCACACTCAGTGGGCCCCGTCTATGCTCAGCATGGATGCCGCCTGGCTGTGAGAATCTTCCAGAACCTGGCTTATACTCCACACTATTTCATGGCTTCATAGCTTTAGCTTCTCCTCCCAAAAACAAATCCCCAGTGGGCCTTTGTCCAAGGACTGTAGAGATGGCTTGGTGGTGAAGAACACTGGCTATTCTTACACAGGACCCTGGTTGGGTTCCCAGCATGGCAGCTAACAACTCCAGTTTTAGAAGTTCTAATGCCCTCTTCTGGCCTCTTCAGGTACTGCACACAGGTGGTGCACACAAGTATTGCACTTACATGTAGGCAATACACGTAAAAAAGAACATTTTAAATATTTTTTTAAAAGGACAGATTCTGGGCACTCCAGGCTCCCTGGTGCTTTGTCTACAGCTGCTTCTGCTCTGCCTGAGTGCTTGATTTAGGGCTAGCCCTGAGCTAGACGTCCCCATTGCTCACCAGCAGAAACCATACCAGAGCCCTTACACCTTTCTCCTTCCACATTGGCTCATGCAATTCCTAGGCATCCTGCATTAGTATCAATGTTAAGCCCTCACGTGTGTCCAAGGGCTTGGACACGTGACTTAAATCTCAGTTTTCCCATGTCTTAAATGGGACCACAGCAACCTATACCTCCCTCTCAGGGCTGCTGCAGGCATATTCAGCGCTCGATGGAACAGGGCTGAGTGTGCAGATGCCACCGTTGTCCCGTGGGGGGGGCTCATGTCACTGTTGTCTTTCTTAG
Seq C2 exon
GTATTGAATGTGGAAAGAAATCAACTCACGCATCTCCCTCGCTCTATTGGGAACCTGCTGCAGCTCCAGACGCTCAATGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792:ENSMUST00000113200:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(48.9=100)
A:
NA
C2:
PF127992=LRR_4=PD(37.8=58.6),PF127992=LRR_4=PU(18.2=27.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types