DreINT0098342 @ danRer10
Intron Retention
Gene
ENSDARG00000007198 | mta1
Description
metastasis associated 1 [Source:ZFIN;Acc:ZDB-GENE-131121-353]
Coordinates
chr17:37656011-37658326:+
Coord C1 exon
chr17:37656011-37656200
Coord A exon
chr17:37656201-37658236
Coord C2 exon
chr17:37658237-37658326
Length
2036 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTCTCATTTACATATTCCAGGTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
AGTCCTCACGGTTTGCCCGTGAGACACAGCGGAAGCCCCAAGTTTGCCGTTAAGACCAGGCAGGCTTTCTACCTGCACACGTCTCAGATGACGAAAGCCGCTCGACGCGTCTGCCAGGACCTGCTGAGATCCAAATACTTGGCCAGACACCCGTACACACCTGTCAACACCATCGCTATCAAAGCTGAGT
Seq A exon
GTGAGTAGGCACATATTTGAAGATTCAGTTCATTAGATGCAGTTGCTTATTGTGGAAATTATGTGTGAAGTATGAGCTGATGTAAACTGTGTAAAACTAATTATAAAGTACTACTAAAATCTAATTGTTAAGATATATAATATATATATATTAAGGGTGTCACGATCTTCCAAATCCTCGATTCGATTACATTTTTGATTCTAAAGGCACGATTCGATTTTCGATTATGAATCATTAATTAATTAATGACCAATTAATTATTTGTAGCCTACCGTTTAAACTACCTGACCTGCATGGTCTTTGTTTTACCCATAAACAAATCATACAGTAAATGAATAAAGGCAAGATACACACATAATTACCACCTGTCAATCACTTTTTCTGCGGGACTCGTGAAAAGGCAGTGATCTGTGTCGTTATAGTGGCGTCGGTAAAAAAGACGCACAACTAACAGGAACCAGCCAACAGTATCTGAGGTGTGCGCTAAAATGACAAGTGAGTAAAAGATTGAAGCAGTCTACTAATCCTCTGACTGCCTGAACCCGCTGTCTCGGAGCCCATGGCTGTGTGTGTGCGTCTGTGTCTGTGTGTGTGTGTCAGAGGTAGAGAGGAAGGAGGGCTGCTCAGAAATGCTACACGCCATTGTGGATCTCAAATCGTTGTCGTTCTAAAATGCCATTTAAAAACAAAGACAGTGTAAACAGGGCCTGAGTGTGTACTTTTCGTGAGCGAATTTGCAATGGGGGCGGGCGGAGGATCGCGATGCCGGTGTTGTCTATATATATATATATATATAGATTTTAGGAGGTCATAATTGTATTACATTTAGCAATTTGAACTTTATAATTAAAAAAAATATATTTTTATTATTGTTTTGATACATTTTCTGTGAAAATCCCTGTGTTTTTCTATAATTGCTAGCAACATTTAAGGAATTTAAAAGTTTGCTTGAATTAGATTTAATATAAAAATTAGATTTTTATATTCTTTATATTAATTGTCCTGTTTTATTAATATAATTTCATAAAGCTCATGAATGTTTTTTAAATATTAGAATTATTGGAAAAATTAAAAATATATTATTTACTCTTTTGTTTACATTCATTTAATGTAATGTAATGTATTTAAAAACTAAGTTTTATTTGTTGTAATGAGTTTAAGAAGTATTACATTTCATTAAAAATATGAAAAATAAAAGCATATTTGACAGCCTTCATTTCGTTGGGGGAAATCATCTGCTTGTTATTTTTTAATGCCTCTTATAATAAATATTTTAATCAGTAAATGTTATACAATTTGGACTTAAAATATCAAAAGGTGATAAGGTGATTTATTATTTTTTTTTAATCACTGGAAATAAATACTATTTGACAACCTCAATTTTGCAATAGAAATAGAATTATCTGATATTTTGTCCTCAGTAATTGTTAATTTTACAAATTATTTAAAAAGATAATTGATTATTAAATATTTTATTCTAAATTTGATTAATGTTTTTTATTGTTATTAGCATATTACACACTAATATTTATGGCCTTTCTGTATTAAATTTTTTTTTTGTCATAGGGCTACATGTTATTGGAAAAATCTGCCATTGCAATATTTAGTTTTTCGGCAGTATACAGTGTGTGTATGTGTGTGTGTGTACACACACACACACACACACACACATATATGTATTTATATTCATTCATTCATTCATTTTCTTGTCGGCTTAGTCCCTTTATTTATCTGGGGTCGCCACAGCGGAATGAATATATATATATTGCTATATGAATACAGTTTCACCAGATGGCTTAAATAGCTCAGGTTATAAATTAACTGCGATGTGACAATTGAGAGAACACACATTGTGATATCGATGCCCTAATTTGTCATAATAGGTGCGTTCAGGTCTTTCTGTGTAAACAAATGAAGCATTTTTAACACTTTACTGAATGAACAAAAATGCTTCTTTGACACTGTACTGATTTACCATATTAATTTGAGCCTAGTCCGAATACATGGTGTTTATTTTTCTCATTTACATATTCCAG
Seq C2 exon
GTGCTGTGCGGTTGCCAGATATGTCCAAAAAACCTGCATCTCTAAAGCAGACAGTAAGGAAGCCTTTAGAGTCTGTGGTTAGATATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007198:ENSDART00000045583:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.453 A=NA C2=0.484
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]