GgaINT0039030 @ galGal3
Intron Retention
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4054826-4055494:-
Coord C1 exon
chr8:4055305-4055494
Coord A exon
chr8:4054916-4055304
Coord C2 exon
chr8:4054826-4054915
Length
389 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCTTTCTCTTTGTTTTACAGGCA
3' ss Score
11.95
Exon sequences
Seq C1 exon
AGTCCTCATGGTGTGCCAGTGCGAAACAGTGGAAGCCCCAAGTTTGCTATGAAGACACGACAAGCTTTTTATCTCCATACAACAAAACTGACAAGAATTGCCAGACGTTTATGTCGAGATATCTTACGCCCCTGGCATGCTGCAAGACATCCCTATCTGCCTATTAACAGTGCAGCAATCAAAGCAGAAT
Seq A exon
GTGAGTGGTGATGCAGCTGGGCACCTACTTGCAAAGGGCAAAGGGGTTCTTTGAGATTCCTTTGCTATTGGGTTGCAGTTCCTGATACTCTTGCTTGCAGTTAGTCCTCCACAAAGTCTGGCTATACTTGTAGAGTGCTCTACGTGATGGCAGGCTAGACAAATAACTTTTAAAAATTCATGAGTTTGTGTTTGTTTTAAAATGTTCTTGTTTGCTGTTACCTTTGGTGTTCTCCTGCATTTGCATCTTGCTGCTGAGACATGCATGCATGCAACCTGTAAGTGCTTGTTTTGATTGGAAAGCTCTCTCAGAACACCTGAGTTATTCACGTAGCTCTGCTACAGTATCATAATCTTTTTACCCTCTAATTCTTTCTCTTTGTTTTACAG
Seq C2 exon
GCACAGCACGTTTACCAGAGGCATCAGAAAACCCATTGCTATTAAAGCAAGTGGTTCGAAAGCCTTTAGAAGCAGTACTCCGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803:ENSGALT00000004434:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.922 A=NA C2=0.903
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCAGTGCGAAACAGT
R:
CTAAATACCGGAGTACTGCTTCT
Band lengths:
270-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]