MmuINT0101418 @ mm9
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:114369784-114370188:+
Coord C1 exon
chr12:114369784-114369973
Coord A exon
chr12:114369974-114370098
Coord C2 exon
chr12:114370099-114370188
Length
125 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CTTGTCCTGTCCTTGTACAGGCA
3' ss Score
10.52
Exon sequences
Seq C1 exon
AGTCCCCATGGCATCCCAGCTCGGAGCAGTGGGAGCCCCAAGTTTGCCATGAAGACAAGGCAGGCCTTCTACCTGCATACTACCAAGTTGACACGCATTGCCCGGCGCTTGTGCCGTGAGATCCTACGCCCATGGCATGCTGCCCGCCACCCCTACATGCCCATCAACAGCGCAGCAATCAAGGCTGAAT
Seq A exon
GTGAGTCTTCCCCTGTTCTCTTTCTTGGGCCTAGCAGGAGCCACACTCAGGCAGAGTGTCCAGGTTGGGGTACAGGTTCTTGGGGAACATGGTTCTTCACCGTACCTTGTCCTGTCCTTGTACAG
Seq C2 exon
GCACAGCACGGCTGCCCGAAGCCTCCCAGAGCCCACTGGTGCTGAAGCAGGTAGTACGGAAGCCCCTGGAGGCCGTGCTCCGGTATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-Mta1:NM_054081:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.709 A=NA C2=0.884
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCCATGGCATCCCAG
R:
GGCTTCCGTACTACCTGCTTC
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: