GgaINT0039030 @ galGal4
Intron Retention
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4016476-4017144:-
Coord C1 exon
chr8:4016955-4017144
Coord A exon
chr8:4016566-4016954
Coord C2 exon
chr8:4016476-4016565
Length
389 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCTTTCTCTTTGTTTTACAGGCA
3' ss Score
11.95
Exon sequences
Seq C1 exon
AGTCCTCATGGTGTGCCAGTGCGAAACAGTGGAAGCCCCAAGTTTGCTATGAAGACACGACAAGCTTTTTATCTCCATACAACAAAACTGACAAGAATTGCCAGACGTTTATGTCGAGATATCTTACGCCCCTGGCATGCTGCAAGACATCCCTATCTGCCTATTAACAGTGCAGCAATCAAAGCAGAAT
Seq A exon
GTGAGTGGTGATGCAGCTGGGCACCTACTTGCAAAGGGCAAAGGGGTTCTTTGAGATTCCTTTGCTATTGGGTTGCAGTTCCTGATACTCTTGCTTGCAGTTAGTCCTCCACAAAGTCTGGCTATACTTGTAGAGTGCTCTACGTGATGGCAGGCTAGACAAATAACTTTTAAAAATTCATGAGTTTGTGTTTGTTTTAAAATGTTCTTGTTTGCTGTTACCTTTGGTGTTCTCCTGCATTTGCATCTTGCTGCTGAGACATGCATGCATGCAACCTGTAAGTGCTTGTTTTGATTGGAAAGCTCTCTCAGAACACCTGAGTTATTCACGTAGCTCTGCTACAGTATCATAATCTTTTTACCCTCTAATTCTTTCTCTTTGTTTTACAG
Seq C2 exon
GCACAGCACGTTTACCAGAGGCATCAGAAAACCCATTGCTATTAAAGCAAGTGGTTCGAAAGCCTTTAGAAGCAGTACTCCGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803:ENSGALT00000004434:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCAGTGCGAAACAGT
R:
CTAAATACCGGAGTACTGCTTCT
Band lengths:
270-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]