RnoINT0094958 @ rn6
Intron Retention
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137943868-137944279:+
Coord C1 exon
chr6:137943868-137944057
Coord A exon
chr6:137944058-137944189
Coord C2 exon
chr6:137944190-137944279
Length
132 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AGTCCCTTGTCCTCACGCAGGCA
3' ss Score
7.21
Exon sequences
Seq C1 exon
AGTCCCCATGGCATCCCAGCTCGGAGCAGTGGGAGCCCCAAGTTTGCCATGAAGACAAGGCAGGCCTTCTACCTGCATACTACCAAGTTGACACGCATTGCCCGGCGCTTGTGCCGTGAGATCCTACGCCCATGGCATGCCGCACGCCACCCCTACATGCCCATCAACAGTGCAGCAATCAAGGCTGAAT
Seq A exon
GTGAGTCTTCTCCTGTTCTCTCTCTTGGGGCTAGCAGGAACCAGACTCAGGCAGGGTATCCAGCTTGGGGTACAGGTAGCCTGGCTCTTGGGGAACATAGGTCTTCATCGTCAGTCCCTTGTCCTCACGCAG
Seq C2 exon
GCACAGCACGGCTGCCCGAAGCTTCCCAGAGCCCACTGGTGCTGAAGCAGGTAGTACGGAAGCCCCTGGAGGCTGTGCTCCGGTATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711:ENSRNOT00000006521:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAAGTTTGCCATGAAGA
R:
AAGATACCGGAGCACAGCCTC
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]