DreINT0098381 @ danRer10
Intron Retention
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25163304-25163690:+
Coord C1 exon
chr12:25163304-25163403
Coord A exon
chr12:25163404-25163501
Coord C2 exon
chr12:25163502-25163690
Length
98 bp
Sequences
Splice sites
5' ss Seq
CTGGTACCC
5' ss Score
3.61
3' ss Seq
TCCTGTCTGGCTTTCTGAAGTTT
3' ss Score
5.37
Exon sequences
Seq C1 exon
AGCGGTTGGTACGTTTGCCCGGGCGTTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGCGCCGCGGCAGCCTCACGAGACATCACACTG
Seq A exon
GTACCCGTCCCATCAGCACCATCTGTCTCTCACTCTCTCTATATCCACCAGAGATGTGAAAACCCTGATTAATTCTTTTCCTGTCTGGCTTTCTGAAG
Seq C2 exon
TTTCACGCTATGGACACACTGCATCGGCATGGCTATGACCTGTCCAGTGCTCTCAGCGTTCTTGTTCCTCAAGGTGGGCCAGTCCTGTGCCGGGATGAGATGGAGGAGTGGAGCTCGTCAGAGGCCAATCTGTTTGAAGAGGCCCTGGAGAAATACGGCAAAGACTTCAACGATATACGGCAAGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903:ENSDART00000127454:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.347 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCACGAGACATCACACTG
R:
TCCAGGGCCTCTTCAAACAGA
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]