DreINT0098424 @ danRer10
Intron Retention
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10827204-10827624:-
Coord C1 exon
chr2:10827454-10827624
Coord A exon
chr2:10827307-10827453
Coord C2 exon
chr2:10827204-10827306
Length
147 bp
Sequences
Splice sites
5' ss Seq
CATGTTAGT
5' ss Score
-2.52
3' ss Seq
TATTTTGTAATTGCTTTTAGGCC
3' ss Score
7.97
Exon sequences
Seq C1 exon
GTTCATGTCAGGTAAAGAGATCAAGAAGAAGAAACACCTATTTGGCTTACGAATCCGCTTCCCACCAGCCCCTCAGAGCTCCGAGCTCCTGTCTGACCGAGAGCCGGAAAAAGCCTCCCACGAGATCAAAATCAAAGGCAGGAAGGCCACCAAACCCCCTCTTTCATCCAT
Seq A exon
GTTAGTCATTCTTTATTTCCTCCTGAGTTTATACAGTTTAGTTTTATTATTAAATATTAAAGAACATGAAATAATTCCTCAATGATATTTTAAGATAAAATGTATTAAATGGGATTTTTTTTAGCATTATTTTGTAATTGCTTTTAG
Seq C2 exon
GCCTGTTACTAACGGAGCAGTGAAGAAAGGAAAGAGGAAGTACCACACACACTCTTTAGAGACGTTGGCCAAATTGAGAAGGTCAAGTGAACTTCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590:ENSDART00000122709:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACACCTATTTGGCTTACGA
R:
TGTGCCAGAAGTTCACTTGACC
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]