GgaINT0037228 @ galGal3
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
NA
Coordinates
chr8:14693271-14694235:-
Coord C1 exon
chr8:14694065-14694235
Coord A exon
chr8:14693380-14694064
Coord C2 exon
chr8:14693271-14693379
Length
685 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
AAATATAAATTTTCTTCTAGGGA
3' ss Score
7.14
Exon sequences
Seq C1 exon
GTTTATGTCTGGAAAAGAAATAAAGAAAAAGAAGCATTTGTTTGGCTTGAGAATTCGTGTTCCTCCTGTGCCGCCAAATGCTGCTTTAAAGGCTGAGAAAGAGCCAGAAGGAACTTCTCATGAGTTCAAAATTAAAGGCAGAAAATCATCTAAACCAATCCCTGATGTGAG
Seq A exon
GTAAAATAATCCCATGATTTTTTTTTTTAGGAATGTTGTGGTAAATAGGAACTACTTCAGGTACTTCGGTGCCTGCAAAAGAAGTCCTGTTCATTGTATAATGTACATTTCTAAGTAACTGTAAAGGTGGACTGTCTGTGTGTTATAAAAATACTTGTAAGTTGTAAACAGATGTAGTTGCATGTTCTCCTTAAAGGTGATTATGAGAGCAGGGTCTTCAGGCTTATAAGTTTCCTGTTATGAGCCTTTTGAAAAACAAAACACAAACCAAAACAACCATTGTGACATTTGGCAGTAAGAACAATAGAAGCTATCCTAACTTCGCTGCCGCTGGGGGGAGGAGAGGGAGTATTTCCTTTCCGGAGCTTTTATGCAATGCTATTAAGTAGGCTTCTAAATAGGAAATATGGTATTCAGTTCTAAGATTGCAGTAGATAGTATGTAGTTCTAGATGTGCTGTTTCTTTAACCAATGGTTGTTTATTCCCCTTCAATGTTAGGGATGTCACTAGGAAGAACTTGTATCTGTGTGTTATTATAAGAGGCAAATGATTGAGCTTTTTACATGACAACTTTGATTTGCCAGGATTTGGTTTAGCACAATGTGTATTCGTTGCCAAAGGAAAGCATTTATTCTTTGAAAATTATCTTCAATAATACAGAAAAAAATATAAATTTTCTTCTAG
Seq C2 exon
GGAATTAAGTAATGGTATAGAAAGAAAGGGGAAAAAAAAATCAGTAGGTCGTCCACCTGGTCCCTATACAAGAAAAATGATTCACAAAACTCCAGAGTCGTCTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124463=DUF3682=PU(28.1=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAAGAAGCATTTGTTTGGCT
R:
AGAGGAGACGACTCTGGAGTT
Band lengths:
256-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]