RnoINT0095098 @ rn6
Intron Retention
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2661821-2665565:-
Coord C1 exon
chr14:2665395-2665565
Coord A exon
chr14:2661927-2665394
Coord C2 exon
chr14:2661821-2661926
Length
3468 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AAATACAGTCTTTGTTTCAGGGA
3' ss Score
5.04
Exon sequences
Seq C1 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTACATCTGACTCCAG
Seq A exon
GTAAAGTCTGTGGTGCAGCACTGAATGTGTGTGTTATGAGGTGGCATGTGACAGTGTGTGTGTGACAGTGTAAGTGGCACGGTGACCTGTGCTAGCCCCACCCACCTTTAGACAAGGTAAGGAAAGGGGGTGTTAGATGTTCACTCTCGTAGCCCTTGGCAAGGCCTTTGAGGAGAGGACTTACTGCTTAGGTTTCTTGTTGCTGACTCACTTCTCACACCTAGCACTTCAGTCACACGCCTTTACCTTCCAACTGCTGAGGGTTTAGACAAGAGAACAAGACAGTGTAGTGAGGAAAATGTGTAATAAATAACAAAGCAATTGATGAGTATCCTGATGTCATTTAGCATTGGTATACTGTTTCATACCTGTTGGGTTAGTAGAGGTGGGGACATTGTACTTCAACTCGAAGGCTTAAGGATGGAGGACTATGTAAAAGAATATTTGAGAATATTCTGTGTGTGAATAATAAAGGAGCAGAGTGCCCCAGGGTGCAGATGTGGAGGCCATGAAGCAGTCTCAGAATCCACAGAAGATTAGTTTGGTATAAATGGGGATTAGAGAGTAGGAATGAGATACTTGAAAGATTGGATGGCTCTTGATCACACAGCAACTGTAGATATGGATACCCTGCTGTCTCTATAAAAATGGTACCCATTTTAATTAAACAGTTGAATTGTCTTTAAAAATTGTTTGCATGGTAGTACAGAGGTAAGAAACGTAGGAAGAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGTTTGCCTAGCAAGTGCAAGGCCCTGGATTCGGTCCCCAGCTCCAAAAAAAAGAAAAAGAAAAAAAAAAAAAGAAAAGAAAAGTAGGAAGAGGTAAAGGCTTGGTTGTGTCTGGATGGTGCTTGTGTAGGAGTCAGGGAAACAAGTGCACTGAATAGGGTTGGCGTCTCTTAGGGCAGAATTGATCAGATTTGCTACTGAATTACATTTTTGAGGGAAAAAGAGGAATAAGTTAACAGAATTTCAAATTTCCTGATTGAGCAACTCACAGATGCTGGTTTCGTACTCAGATAGGGAAGAATGTGATAGTGAGGTGGGTGGGGGAACATTTCCTGTTCTGTTCCTAAGTTGAGATTCTTATGACACAAATGTAAATGGTCATGGACTTTGGTTTGTAGGTAAGGAGGGCACAGACAGGTCAGGACAGATGGTGAAAATCAGAAAGCAGATTTGTAGTCAGGAGAGTGAATAAAGTGATCTGGGACAAGCAGAGAAGAGAAGGGGATGTCAGTTGTTTGAATTTAGAAATTGGGAGGTTTATAAAATGTAAGGCATAAAGTGAAAGGAGAGTGAAACAGAATGACCATCCTGGGAGAGTGAAACCAGGAGTGTTGGTGTCATGTAAACCAAAAGAAGGGAATCATTTAAGAAAGATGGATAAACTAAATGATACTGGGCACTAGTAAAACATGCGAGGATACCGTAGCATTTTGTTATTAGTCACAGCAACAAACACAGTTTATTTAGAGTAAGCAGTGAAGATTGGAATGAGCGTTGAAGTATGACTGAATCCATGCCTCGTGATTTATGTATTAAGAACTATGCTTCTGCATGTCAGGGATACTAACATTCAGAGTAACGGTGATCATGAAGGGAAGGGGCATAAAAGGGTACAAAAGGAAACTGAGTTGGACAGAAGAGAGTGAAGAAGAAATGTTGTCAGGGCTGTGAGTGAAGTAAAGTGAACATGAAGCAGACCAATGGAATGGCAGCAGAAGGTGGGAATGAGAGTAGAATGTAACGGTATGTCAGTAGTTAGGAATGGCCAGGAAACAAAGATGAGTGTAAGTGAAACCTCATTTAGAAAGCAAAGGGAAGGTTCTGTGCCTCAGTCTGAGAATAACTTTTGGTAAAAGCAGAGGATATGCTTGTAGAAGACGGAGACCTAAGGTTATTGTGTGGTAGTCTATTTTCTCAAGGAAGTGTGAGGTGTAAGGCTGCTTGAAAGGGCTGTATGCAGTGATAGTCTAGCAAGAACAAGAAGAGTAGGGAAATGTGTTTACAAAACCTTGACAATACCACATAGCCATTTTTTTTTTTCTTTTCTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCACATAGCCATTTTTAATAAGGGTATATTTAAGGTATTGTTGAGAGAGGAAAAACGCTTCTTCCTGCCATTTTTCGGTTTGATCTAATCCTTTACTCTCAGTTGCCGTTGTGAATTAAGAAGCGAGAATCCCACAGACATCACGTTGCTGTGGTGTTAGGAGTGGCAGCAATCAGATTATCGAGTACCAAGAGGGGCTCATCTTTCTTCAGAGCATGCCTACCTTGTGGAGCGTGTGTACGCACAGTCCTTTGAAGGCTAAGTGTGCCATTACTTCTCTCGGTGGTCCTCTTTGCATGTTAGGTTATTTTGTAAAATGCATGTCCCATCCATCCTTGTCCTTAGAGTTTTGACCTCTAGGCCTTCGTCTTCCCATTCCTTCCTCTTTGTCCTCATACTTGGAGTTTTCCCTGGTTTATTTCCTTTCTAGTCTGCAGAGGTTGTGGTCCTTTTCTTTTTCTTTCATTGTGCTTTCCTTATAGATCCTCTGGCCTTCATTTGTTAGCTTGTGTTTATTTGTGAGCGAGTCCTTCTGCAGAGGAACCATCGTTGTGCCCCTTTTCTCCCTTTCTGTAGCAGCCGTTTTTCATGGAGAGACTGTGTTCTGCATGTTCCTGTCTGTTCCTTTTGTCGTTTTCTTTGTTAGCTATATCCTCATCTATACAACTTCTTACTACTTGGTACACATGTGCTTCATCACATATATCCTCATCACATATATCCTCATCACATATATCCTCATCACATATATCCTCATCTGTACAACTTCTTACTACTTGGTACACATGTGCTTCAAGAGTGATTCTCTAGTTTGTGGTTGGCCCTTTCAGAGGCTCTGTCTCAATGTGGAAGATTTCTTTATTGTTTCTCCTTCATGTTCTGCCACCTTGGGCTTGATTCTGCCTCTGATGGTATTACTCGTGTTCCTTTACATAGATGAATATGTGATGTTATTATGTCTGAGACTGTGTTTAAAGAGAAACTGTGAAAATTAGTGAAATTAGTGAAAATAGCAGGTATTTCACAAGGTTAGCTGATTTTGTAGTCATTTTCAGTAGTAAATTCTTGAAACCTTCCCCTCCCAAGTAGTAAGAAATAAAGTTTTAAAGTCTTTGGTAGTATGGCTTCTTGGTGATTTTTTATTTTTTTAAAGTCTTGAAGTGATAAGCATATATTAGATATATTAGTAAGGAGAGCACCCCTTTCCTTAAACTTTCAAATATGGAATTAGAATTATTTTTTAGCTATGTAAAATTGTCAGTTTTGCTTTATGCAAAGATTAAATACAGTCTTTGTTTCAG
Seq C2 exon
GGAAGTAAGCAATGGGATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCTCCTGGCCCATATACAAGAAAAATGATTCAGAAAACTGCTGAGCCGCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075:ENSRNOT00000000086:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]