HsaINT1023672 @ hg38
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:29535]
Coordinates
chr1:93129278-93133808:+
Coord C1 exon
chr1:93129278-93129448
Coord A exon
chr1:93129449-93133702
Coord C2 exon
chr1:93133703-93133808
Length
4254 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATAATGGTTTTCCATTTCAGGGA
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACATCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGATTCAAG
Seq A exon
GTAAAAGTTGATCTGTGGCTTAGTTTTTCTCTTTAGCTTATTTGTAACTAAAAATGTATGTTATTTAGTCTCCTTAGTATATTTGAAAGTACAAGTGGCAGTTACTCTGATTTTTTTTTTTTTTTTTTTTGGTCTATCATATCTTGCTTAGACAAGGTATGAAGAGTTGATGCCAGATGCTTGTTTATTTATTTTAGGACTTTGGCCTTCCAGAAATAGACTCTATTGATTTTGTTAGCAAACAGCTTAAGAGTACTAGCCTGTTTGTTTGTTCACTTTTCATTGATTGATTGATTGATTGATTCATTCATTCAGCACAGTTTTCAAGTGCCTTATTATCTAAGTTTTCAAGTGCCTTATTATCTAAGTGCTAGGCAGTACAATGACAGATAGATTTTTCTTCTGCCCTGATGGGGTTTACAAAGGTGATAAGTAAAATAGTTACAGATTATGCTAGTGCCATGTAGGATAGCATACTGTTTTAGACTTTACTGTGGATAGAGATGGGGCCTTTGTACTTTAACAATGTGGCTTAAGGAAGGACTATTTAAGATAATATTTAAATTAAGACTTAAAGAATGAGAATGTTATAACAATGTGAAAAACAAAGGGAAAAACTACTCCAGCTAGCAGAAACAGCAAGTGCAAAGGCTTTGAAACATATTCTAAGAACTCACAGAAGACTGGTGTGGTATAAATGAGGATGAGAGAGTAGCATCAGGTATTGGAAAGATTAGGTGGGGCTTGATCCTGTGTAGGGTCTTGTAGGTCTTACAAGGAATTTGGGTTGTTTTCTAAGAATAATGGGGAGGCATGTAAGGGATTTAATTATCTTTTAGAAATACTTGGCCGGGTGCACTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTTACCAATATGGTGAAGCCCATCTCTACTAAAATTACAAAAATTAGCCGGGCATGGTGGCTTTTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAATCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAATATTGTTTTGGATGCTGTTTTGAGAATGGATAGTATAGAGGTAAGAATAAAAGCAGGAGAAAATTAACACTCAATTGTCTAGGTGAGAGATAGATGATATGAGGGCTTGTGCAGAGGTAGGTGGTAACACTCAAATGGAGAGAAAACAGATATGAGGTCTTTATTGGAGGTAGAATTAATTGGATTTGCTAATGAATTAAATTTCTGAAAATAAGGAATCAATTAAATAATGCCCAGATTTCTGGCCTGAGCAACTGGTGGGTGGTTAATCAAGATCTGGAAGAACAGATTTTGGTATGGTGAATGAAGCATTCTTCTGTTTCATATTCATTGAATTTGAGATTCTTATGAGGGACAAACACACACACACACACACACACACCCTCATACACACAGGATGATGTGAAATACAGGCAATTGGATGTGTAATTCAGGAGCTCATAGGAGAGGTCTGGGCAGGTGATACAAATTTGGAATCTGATTGATAAAAGCTATGAGAATGAGTGAAATTACCAAGGGAGCAAGTAGAGAGAGAAGAGAGGGTGGTCTGGGATCATGTCCTGATATCATTTATAAATTTGGAAGAGGTGAAATAAGCAAGGAGACTAAAAAAGAATGATCAGTGAGATGGGAGGAAACCAGGAAGTTTGATGTCATGACAACCAAAAGAAAGGTAGTGTTTCAAGAGAGATAGGTATATTAAAGTGTATTGAATGCTAGTGAGAGGTAGATTAAAATGAAAGAAAAATATTTATTGCATAAGGTATCATTTTGTTATTAGTGACCTTGATAAAAGGAATTTCTTTGAAGTGGTACAGATAGAAACCAGATAGGACTGGGTGAAAGTATGACTGAACCCAGCATTGCCAAATTTACGTGTCAAACTGGGCTTCTCCTGCGTATCAGGGACACAGGCAGATTCAAAATAATAACAGTAGTAAAGGAAAGGAGGAAAATAGGAAACTATCTTTAAGGATCCTGAATGAGAGGGGAGAAAATGGAAAGGGTATATGTCATCAACACCTAGAAGCTTTCCTATGTAGGGAGGCCGACAAATGGAATGGCAGCTGAAGAGGGGGATAGGACTAGTCAAATGATGGTTTTTTAAAATAGATGGGAGATAGTTGGAACCTGTTTTTGTGTGTAAGTAGGAATGATCCAGTGGAGAAGAGGAAATTGGTATAGGAGAGTAGAAGCCAAAAGAGAAGGGATGTAGAGCCTGAATGTGGGACTGGCCTTTTCTAGAAGGAGAAGCATCCTTCTGTTGAAATGGGGTGAAAGAGAAGATGGGTACAGATGCCAGTTCTGTTGTAGATTGGGCAGTTGGAAATTGACCGAAGTTCTTGCCTGGTAGCCTCCATTTTCTCGATGAAATATAAGGTAAAGATAGCTGAGAGACTTGTACAGAGAGGGGAATTTAAGGGTCAATTAAGGGTATGGAATAGTCATCTTGGAGATAAGGAAATTGACTGAAGTTCTTGCCTGGTAGCCTCCATTTTCTCGATGAAATATAAGGTAAAGATAGCTGAGAGGCTTGTACAGAGAGGGGAATTTAAGGGTCAGTTAAAGGTATGGAATAGTCATCTTGGAGATAAGGAAAATGTCATTACAAAGCCTTGACAATGAGTCCAGTTATATGAAGTTTGTAAGAAATTAGCTACTAATTAAGTTTTCTTTGAATGAAGGAAAGAATGCTTATTCTATCACTTTCAGATTTTGTCACTCAGATCCTTTGCTAGCAGTTGCCCATATTATGAATCAGAAAAAAAAATTCCACAAGCTTTTTCATTTCTATCATGATTGTGATAGGATATTCCCTTTGTGGTAGCTATCAGGTCATCTGATGCCACCAGATAAGGATTCAGCTGCTTTCTTTAAAGGCATCCTCAGTTCCTTCTGGACCTTGTGTATAAGTTGTTCCTTTTAGTTTGAGATTACTTTCTTTAGTCCAGGAGTCCTTTATAAATATTATGTTGATCATTTTACAAAAGAAATGGATATCCCATCCATCTTATTCTTGAGACTTTTGATTATAGCGTCTGGTTCTACTTTGTCCTTCTAGTTCCCCTACTTTCTCCTTCCTCATACTTCCACCTTTATTCCCTGACCTTTTTTGGCATCTGGAGGGATAAGTTTTTTTCCTACTTTCTCCATTCATCTCTTTCTAGGCTATTGTATAGTGTTCTTTTTTCTCTCCTTAATTGAAGTCTCCTGGACAATTTCCTCATAGCCCTCACTCCATTTTATTAGCTTGGCTTGTATACACATTTGTCACTTTCTAACTATATTGTGAACTCTTTAGCACAGGGAACACCTTTGTATCCATATTATCTAATATCATCTTTATATGGTAGCTATTGCTGAGTAAATGAAATAGATATTCTTTCTATATATATATTTTCTTTTTTTCTATAATTAGTGTCTTTGCCTATTGCACTTTTTTCCTTCCTATTGCTTGGTATTTGGCTTTATGTTTAAAAAATGGTTTTCTAGGTCTTTCTGATTTTTCCTTTTGAATGACTCCCTGAGAATATGAAGGATTTCTTACTCCTTTCTCCTTTACATTCTGCCACTCTGGGCTTCATTCTCTTTCTGATAGTGTCATTCAAGAATCTACATATATATCTAAAGGCAGCCTTTATGACTACTACAATGTTAACATAGATATTTCCTGACTCCATGAAGTTAACTGCTAAATTCATAGTCATTTTTAGTAGTAAATCCTTGAAACATCCTCCAAGTTGTAACCACCTAAAATTAAACTATATAATTGAGCTTTTAGGAGTTTTGAAATCTTCCATCCAGTATAATTGTCTGGTTTTTGTTGTTGTTTTTAAATCTTTAAGTGGTATATATTGTTCAGAATTATATTAAAGAGGACTTTCTTTAAACCTTTCATAATGTAAATATCTTTAAAGTCAAGAAATATTTATTTGGATTAGAATATATTATCTGTGCACTTGACTAAACTTGTGGATTCAACTAATATTTACTTTTTATTACCATTAATATAAAATAATAAAATATATGTATATGTGTCTAGTTACATACATAGAGTCAATGTCTTTGTTTTCTTTATGCAGAGATTAAATGCATAATGGTTTTCCATTTCAG
Seq C2 exon
GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033:ENST00000370298:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains