GgaINT0037228 @ galGal4
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12943049-12944013:-
Coord C1 exon
chr8:12943843-12944013
Coord A exon
chr8:12943158-12943842
Coord C2 exon
chr8:12943049-12943157
Length
685 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
AAATATAAATTTTCTTCTAGGGA
3' ss Score
7.14
Exon sequences
Seq C1 exon
GTTTATGTCTGGAAAAGAAATAAAGAAAAAGAAGCATTTGTTTGGCTTGAGAATTCGTGTTCCTCCTGTGCCGCCAAATGCTGCTTTAAAGGCTGAGAAAGAGCCAGAAGGAACTTCTCATGAGTTCAAAATTAAAGGCAGAAAATCATCTAAACCAATCCCTGATGTGAG
Seq A exon
GTAAAATAATCCCATGATTTTTTTTTTTAGGAATGTTGTGGTAAATAGGAACTACTTCAGGTACTTCGGTGCCTGCAAAAGAAGTCCTGTTCATTGTATAATGTACATTTCTAAGTAACTGTAAAGGTGGACTGTCTGTGTGTTATAAAAATACTTGTAAGTTGTAAACAGATGTAGTTGCATGTTCTCCTTAAAGGTGATTATGAGAGCAGGGTCTTCAGGCTTATAAGTTTCCTGTTATGAGCCTTTTGAAAAACAAAACACAAACCAAAACAACCATTGTGACATTTGGCAGTAAGAACAATAGAAGCTATCCTAACTTCGCTGCCGCTGGGGGGAGGAGAGGGAGTATTTCCTTTCCGGAGCTTTTATGCAATGCTATTAAGTAGGCTTCTAAATAGGAAATATGGTATTCAGTTCTAAGATTGCAGTAGATAGTATGTAGTTCTAGATGTGCTGTTTCTTTAACCAATGGTTGTTTATTCCCCTTCAATGTTAGGGATGTCACTAGGAAGAACTTGTATCTGTGTGTTATTATAAGAGGCAAATGATTGAGCTTTTTACATGACAACTTTGATTTGCCAGGATTTGGTTTAGCACAATGTGTATTCGTTGCCAAAGGAAAGCATTTATTCTTTGAAAATTATCTTCAATAATACAGAAAAAAATATAAATTTTCTTCTAG
Seq C2 exon
GGAATTAAGTAATGGTATAGAAAGAAAGGGGAAAAAAAAATCAGTAGGTCGTCCACCTGGTCCCTATACAAGAAAAATGATTCACAAAACTCCAGAGTCGTCTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAAGAAGCATTTGTTTGGCT
R:
AGAGGAGACGACTCTGGAGTT
Band lengths:
256-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]