DreINT0099719 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7446541-7447680:+
Coord C1 exon
chr6:7446541-7446684
Coord A exon
chr6:7446685-7447584
Coord C2 exon
chr6:7447585-7447680
Length
900 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGC
5' ss Score
4.2
3' ss Seq
TTGTTTTTCTGTCACTCCAGCAA
3' ss Score
6.72
Exon sequences
Seq C1 exon
CTGATCTACTCCTGGAGGGTTTCAATAGCTACCGCTTCCTCTCCAATGGTAACATTCCCATCCCTGGCCAACAGGACAAGGATAATTTCCAAGAGACCATGGAAGCCATGCATATTATGAGCTTCAATCATGAGGAAATCTTAT
Seq A exon
GTAAGCATTCCTGAAACTTACACATCTCTATGTAGTTTATTTATTGCTGTTTTATATAGGCTTGCTAGTAAATCATAGTTCTTGTTAAGCATTTGTAGAATTTTCCCCCCTTTTTATTATTTGGATTAGATTACCTTTTGCATTCACTAGCCCAGTGTTTCCCAACCTTGTTTCTAAAGGCACACCAACAGTACACATTTTCAACCTCTCCCTAATCAAACACACCTGAATCAACTCATTAGAATATTATAAGAGACTCCAAAACCTGAAAATGGGTCGGATACTGTTGGTGTGCCTTTAGGAACAGGGTGGGGAAATACTGCACTAGCCCATGTGCAATGGTCCTGCGGTGGGATTATTCTCTTTTAATTAATGGGTTTTTAACAGTATGTGTTAAAATATCAAGCTGTCCACATTAACACATGCATTTTTTTATATTTTATAACTTAAATTACACAGTTTACCATACAAACTGAATATAAGCTACATCTCCAGTATACTTTTTCGCACCTTGACAAAGACTGTAGAAGCCGTCATGCCATTAAACACAAATAAACAGTTCAACACAGTTTAATTGTTTGTGTGTTTGAAAAGTTTGATTAGTGAGAACCAAAATTTGGCATAGATTTCTCAATATATAAAATCAGGTTTGCTTACAGATAAATAATTCCTTAATTAAACCAGTTAGGATCTTTAAAGAAATGTATAAAACTTATTTGATATATTTATGAAAGGTTAAGTGGAATTGTTATCAGATAATATAATTAATATTAAGTATACAAAAGTCTGCCAAGTTCTGGTCATAGTGGTTTTGTATTATAAGCATGCCACACTGGACAGAACTTTTTTATGTCAAATCCCTGCATACAGTTGAATGTCCTTGTTTTTCTGTCACTCCAG
Seq C2 exon
CAATGCTGAAGGTGGTTTCAGCCGTCCTGCAGTTTGGTAACATTGTGTTCAAGAAGGAGAGAAACACAGATCAGGCCTCTATGCCTGAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTACTCCTGGAGGGTTTCA
R:
CTGTGTTTTCAGGCATAGAGGC
Band lengths:
239-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]