GgaINT0127239 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1722200-1722742:-
Coord C1 exon
chr18:1722599-1722742
Coord A exon
chr18:1722296-1722598
Coord C2 exon
chr18:1722200-1722295
Length
303 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
GTATGTCTTTGTTAATACAGCAA
3' ss Score
3.86
Exon sequences
Seq C1 exon
CTGACTTGCTGCTTGAAGGATTTAACAATTACAGATTTTTATCCAATGGCTACATCCCCATTCCTGGGCAGCAAGACAAGGATAACTTTCAGGAGACGATGGAAGCAATGCATATCATGGGCTTTTCGCACGATGAGATCTTGT
Seq A exon
GTAAGTTAAACCTCTTGCATTTTTAAAGTGTACTTTTTTTTCTTGTGCACACACTCACTACATTGGAGTCACCAAATTTAATGTTGCTTCAGTGTCTTGACAGCCTGCAGCAAGCGTTTGCTTAACATGAGCTTACAGCTGAGTTGAGTTAAAACCATTTGCCTAAAGAGTGTAGTACAAGCTTCATTTCCTTTTTGAACTTGTACTTCAACTTTGGAAGGAAAGTGTCTTAAGTAAGAGAATTAAAAATTGTGAAGCTGAGCCCTCTTCAATAAACTGGTGTGTATGTCTTTGTTAATACAG
Seq C2 exon
CAATGCTGAAAGTGGTGTCTTCAGTGCTACAGTTTGGAAATATTTCCTTCAAGAAGGAGAGAAATACTGATCAAGCTTCTATGCCAGAAAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTTGCTGCTTGAAGGAT
R:
CAGTATTTTCTGGCATAGAAGCTTGA
Band lengths:
240-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]