MmuINT0103252 @ mm10
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68762511-68762933:+
Coord C1 exon
chr11:68762511-68762654
Coord A exon
chr11:68762655-68762837
Coord C2 exon
chr11:68762838-68762933
Length
183 bp
Sequences
Splice sites
5' ss Seq
TCTGTACGT
5' ss Score
4.47
3' ss Seq
TCTTTTTTATCCATATAAAGCAA
3' ss Score
4.85
Exon sequences
Seq C1 exon
CCGACTTACTCCTGGAAGGTTTCAACAACTACAGATTCCTCTCCAATGGCTATATTCCTATTCCTGGACAGCAAGACAAGGATAACTTCCAGGAGACCATGGAAGCCATGCACATCATGGGCTTCTCTCACGAAGAGATCCTCT
Seq A exon
GTACGTGTGTCCTGCCTCCTGCCCTTCATTCTTAGAACCCACGTTAGATAAACTGGGGCGCTAATGAGAAGCCCCGGAGAGTTGCCAGAGAGTTTCGTGGAGCCAGCTACGGCACCAGATAGGTTAGACTGTGTCTCTGCTACATTTTAATCTTCTTTTCTTTTCTTTTTTATCCATATAAAG
Seq C2 exon
CAATGCTTAAAGTCGTATCTTCAGTGCTGCAGTTTGGAAACATCTCTTTCAAAAAGGAGAGAAACACTGACCAAGCCTCCATGCCGGAGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900:ENSMUST00000102611:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTTACTCCTGGAAGGTT
R:
CTGTGTTCTCCGGCATGG
Band lengths:
240-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types