HsaINT0107497 @ hg38
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8548313-8548787:-
Coord C1 exon
chr17:8548644-8548787
Coord A exon
chr17:8548409-8548643
Coord C2 exon
chr17:8548313-8548408
Length
235 bp
Sequences
Splice sites
5' ss Seq
TGTGTATGT
5' ss Score
3.3
3' ss Seq
TTCTTTTTATCAATATGAAGCAA
3' ss Score
3.16
Exon sequences
Seq C1 exon
CTGATTTGCTTCTTGAAGGATTTAATAACTACAGGTTTCTCTCCAATGGCTATATTCCTATTCCGGGACAGCAAGACAAAGATAATTTCCAGGAGACCATGGAAGCAATGCACATAATGGGCTTCTCCCATGAAGAGATTCTGT
Seq A exon
GTATGTGTGATTTCTCTAAGATTCTGGTACTCACTTTCCTAAGACTTATACATCTGGGGTAAATCACCTAAACTAGAAAATGACTGGGAAACTAATGAATTGTATGAAATCCTGAAAAGACATGTCTTACTGAAAAGTTTTGTATAGCTAATTTTTAGCACAAAATAAATGAGAATATGTCTCCGCTACATTTTGAGGCAATATTAATTTTTTTTTTCTTTTTATCAATATGAAG
Seq C2 exon
CAATGCTTAAAGTAGTATCTTCAGTGCTACAGTTTGGAAATATTTCTTTCAAAAAGGAGAGAAATACTGATCAAGCTTCCATGCCAGAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026:ENST00000269243:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGGTTTCTCTCCAATGGC
R:
CTGTATTTTCTGGCATGGAAGCT
Band lengths:
213-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development