DreINT0099826 @ danRer10
Intron Retention
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36544433-36544825:-
Coord C1 exon
chr3:36544617-36544825
Coord A exon
chr3:36544542-36544616
Coord C2 exon
chr3:36544433-36544541
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AAAATATTTTCTTGCTCTAGAGA
3' ss Score
6.92
Exon sequences
Seq C1 exon
GTGGACCAGCTGACCAATGAGCTGCATACTGAACGCTCCAATGCTCAGAGGATGGAGAGTGGCTGGCAGCAGATGGAGAGGCAGAACAAAGAGCTCAGGGCCAAGCTGCTTGAGATGGAGGGACAAGTCAAGTCCAAGCAACGGTCCACTGTAGCTGCCCTAGAGTCGAAGTTACAACAAACAGAAGACCAGCTGGATCATGAAAGCAG
Seq A exon
GTGAGATCATCAGCATTAAGATGGATTTGGTTGTAAAGAAAAAGTAGGCCCGACTAAAATATTTTCTTGCTCTAG
Seq C2 exon
AGAGAGACAAGCAATTGCAAAGGCCATGCGCCAGAAAGACAAGAAACTAAAGGAGCTGATGAATCAGGTAGAGGATGAACGGAAACAGATGGAGCAATATAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972:ENSDART00000166896:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATGGAGAGGCAGAACA
R:
GCATGGCCTTTGCAATTGCTT
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]