GgaINT1018549 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7563005-7563821:-
Coord C1 exon
chr14:7563613-7563821
Coord A exon
chr14:7563114-7563612
Coord C2 exon
chr14:7563005-7563113
Length
499 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TGTTCCACTGTCATTTGCAGAGA
3' ss Score
9.25
Exon sequences
Seq C1 exon
GCAGAGCAACTGAACAATGAGCTGGCAACAGAACGAGCAACCGCACAGAAGAATGAAAATGCCAGGCAGCAACTGGAGAGGCAGAACAAAGAGCTGAGGAGTAAACTGCAAGAGATGGAAGGAGCTGTGAAGTCTAAATTCAAAAGCACAATTGCTGCTCTGGAGGCCAAAATTGCTTCTCTTGAAGAGCAATTGGAACAGGAGGCCAG
Seq A exon
GTACTTAGGCTTGCAGAGGGCACAGACATCCATTTATTAGTCTAGTTAATGAGACAAAGTAAACAAATGCATATACAATTTGTGTAATCAGGTTTTCAGTACCATTAATATTTGGTAAATTCTCTCCCTACATAACATTCCTTAGAGACTTGGCCACTAATTGGAGTTGTTACAGATTCTGAGTAAAAACCATTTTATTCCTGAAAAGTTCTACTGGTACAGCAAGAATCTGCCCCCCTACTTTGCCATGTGGCCCTAGCAGATTCTCTATTATACATTGTGCCATTTGTAGGACTATTTCCCAAGGAAGTCAATTTGTGTTTTTGTAGATCTCCTTATCCGCAAAAGTAAAAACATGTATTTATTTATTTATTTAATCAGAAGACCTTTACATTTTGCTTAGAATTTATCTATTGCATTCAGATAGGCCTTTACCATATGGTTCCTTGGTGCCACATTCCTGAAGCCACATCACCAAATGTTCCACTGTCATTTGCAG
Seq C2 exon
AGAGAAACAGGCTGCAGCCAAGACATTACGCCAGAAGGACAAGAAGCTGAAGGATGCATTGCTGCAGGTGGAGGACGAGAGAAAACAAGCAGAGCAATACAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGAACAATGAGCTGGC
R:
TGATCTTTGTATTGCTCTGCTTGT
Band lengths:
312-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]