RnoINT0096373 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:852030-852788:+
Coord C1 exon
chr10:852030-852238
Coord A exon
chr10:852239-852679
Coord C2 exon
chr10:852680-852788
Length
441 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTCTTTCTTCCCCATAACAGAGA
3' ss Score
7.96
Exon sequences
Seq C1 exon
GCTGAGCAACTGAGCAATGAGCTGGTCACTGAGCGCAGTGCAGCTCAGAAGAATGAGAGTGCACGGCAACAGCTGGAGCGCCAGAACAAGGAACTCCGAAGCAAGTTGCAGGAGGTAGAAGGTGCTGTCAAAGCCAAGCTTAAGTCCACTGTTGCGGCACTAGAGGCCAAGATTGTGCAGCTGGAGGAGCAGATTGAACAAGAGGCCAG
Seq A exon
GTATGGGGGTTCCAGAGCTCCAGCTTTCTGGAGAGCACCTGTAGTTGTTGCTTTTCACATCTTGATGGATCAGGCATCAGAGAGTTTGGACTGAATCAGAGGCAAATATCACCTTTAAGTCCCATCCTGCTAGCTAGGCCACATCACAAAGGTTCTATAACTGTGCCAAACAGCCTACCCTGATGGATATCCAACATTTGCCTATGGGGCATCTTACATCAATGGAGACTTTTTGTGACTGGCTCATCCCTTCATAAGAAGTCATTTGTGCTGTAGCATGCATTGTGATACCTCAACTTTCTTTATTCTACTTCTGGCTGATTCTTGGGATGACTCTTGATTCTGGGCTCAAGGAAGCTGGGACACCATGCCTTGGTTAACATGCCATTTACAAGGATGCCATTTCAATTAGAAACCACCTTTCTTTCTTCCCCATAACAG
Seq C2 exon
AGAAAAACAGGCAGCCACCAAGTTGCTGAAGCAAAAGGACAAGAAGCTAAAGGAGGTCCTACTGCAGGTGGAGGATGAGCGCAAGATGGTGGAGCAGTACAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=0.459
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGCAACTGAGCAATGAG
R:
CTGCTCCTTGTACTGCTCCAC
Band lengths:
318-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]