MmuINT0103285 @ mm10
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14200969-14202271:-
Coord C1 exon
chr16:14202063-14202271
Coord A exon
chr16:14201078-14202062
Coord C2 exon
chr16:14200969-14201077
Length
985 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTCTTTCCTCCCCATGACAGAGA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GCTGAGCAACTGAGCAATGAGCTGGCCACAGAACGCAGCACGGCTCAGAAGAATGAGAGCGCACGGCAACAGCTGGAGCGCCAGAACAAGGAACTGCGAAGCAAGTTGCAGGAGGTAGAAGGTGCTGTCAAAGCCAAGCTCAAGTCCACTGTTGCGGCGCTGGAGGCCAAGATTGCACAGCTGGAGGAGCAGGTTGAACAGGAGGCCAG
Seq A exon
GTATGGGGGCTCCAGAGTTCCAGCTTTCTGGAGACCAGGAAGGAACGCTTGGGGAATCACCCTAAGAGCCTCATGGCCTAGAGTATGACAGTGGAGTGTGTGACTATGGCCACAGGGCAAGGATGTACTGAGCCTGCCTCTGGTTGAGAGCAACCCCTCAAAATGTTAGGTGCTGTTAGAATGGTGACGGTCCTCTAGACATAAGCCAGTCTTTGTGGGAGCTCCCGGACTTTTCTTAACCTCCCCCTGCCTCTAGGGACATGAAAGGCCACCAGCAGGCCACAGACACAGGAAGGCTCCCCTGCCTGATCATGGGTCACTGCATCTTTGCAACCTAATGTTTTAAAGATTCTGTGCTATTTATACCACCTTTCCAGATGATTCACACAGTTTTGTGGTTTTTAATTTACCTACATATATCTAATGATCATTTGTATCACCTCAAAAAAAAAAAAACAAGAATAATAAAAACCCACGACTCTGTCCTTCCTTCCTTCCTTGTCACCCCCAACCTCAACCATCCACTTTGTCCCCACGGAGTGGCTTATGCTGAACGTATCAGTTACTTTTCTCATTGTTGTGACCAACCACCTGACAGGAGCAACTTAATATAGGAAGGGTTTGTTTTGCCTCACAGTTTCCAGCCTGTCGTGTGGGAAAGGCACAGTGGAGCAGCTTGGTTTGGGGTTAGCACCTGTAGCTGCTGCTTCTCCCCTCTTGATGGATCAGGCGTCAGGGAGTTTGGGCTGAATCAGAGGCAAATATCACCTTTAAGTCCCTCCTCCACTGACCCATCCTGCTAGCTAGGCCACATCACAAAGGTTCTACAACTGTGCCAACTTTCTTTATTCTACATCTGGCTGATTCTTGGAATGGCTCTTGAATCTGGGGCTCAAGGAAGCTGGGATGCCATGTCTTGGTTAACAGGCCAATTATAAGAATGCCATCTCAACTGGAAACCACCTCTCTTTCCTCCCCATGACAG
Seq C2 exon
AGAGAAACAGGCGGCCACCAAGTCGCTGAAGCAAAAGGACAAGAAGCTAAAGGAGGTCCTGCTGCAGGTGGAGGATGAGCGCAAGATGGCAGAGCAGTACAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830:ENSMUST00000090287:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=NA C2=0.892
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGCAACTGAGCAATGAG
R:
CTGCTCCTTGTACTGCTCTGC
Band lengths:
318-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types