DreINT0099881 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24966802-24967349:-
Coord C1 exon
chr11:24967262-24967349
Coord A exon
chr11:24966920-24967261
Coord C2 exon
chr11:24966802-24966919
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TATTTTCCTCTTATTTGCAGGGA
3' ss Score
9.41
Exon sequences
Seq C1 exon
GAAAATCTCAACAAGCTGATGACAAATTTACGAAGCACTCAGCCACATTTTGTCCGCTGCATCATTCCCAATGAAACCAAAACACCAG
Seq A exon
GTAATGAAAGCCCAGAGCATGTCAAAACCTTTAAACCAGTGTTTCTCAACCATGTTCAACCACCAACACAGCATGTTTTGGATGTCTCCTCTGTCTTTCAGTCTCTGCTAATGAGCTGATGATCTGAATCAGGTGTGCTTGCTTAAGGAGACATGGAAAAAGTGCAGAGCTGGTGGTCCTCCAGGAACATGGTTGAGAAACACTGCTTTAAACCAACTGTATTGTAATAACATCCTCTGTGTTTCTAGATTTATTTTACGTAAATGCAGTGATCTAAAATGGCACCCAAGCTCAGTTCAAACATCTAAGTTTTTTCGTCAAATATTTTCCTCTTATTTGCAG
Seq C2 exon
GGATCATGGATTCTTTCATGGTTCTGCATCAATTGCGCTGTAATGGAGTCCTGGAAGGCATACGCATTTGCAGGAAGGGATTTCCAAACAGAATGCTTTATGCTGAATTCAAACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATCTCAACAAGCTGATGACA
R:
CGTTGTTTGAATTCAGCATAAAGC
Band lengths:
206-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]