MmuINT0103616 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155448939-155449297:+
Coord C1 exon
chr2:155448939-155449026
Coord A exon
chr2:155449027-155449179
Coord C2 exon
chr2:155449180-155449297
Length
153 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
3' ss Seq
TCCACTCCCACCACATCCAGGGG
3' ss Score
6.28
Exon sequences
Seq C1 exon
GAGAACCTCAACAAGCTCATGACCAACCTGCGGGCCACACAGCCCCATTTCGTCCGCTGTATCGTCCCCAACGAGAACAAGACTCCAG
Seq A exon
GTGGTGTCCCCGGGCTGGCCAGGATGGGGGAACTGGAGGCATCTTAGGCTCTCACCTTGGAGGGTTTGCTCAGTCTCTAAGTAAGGCCTGGGTAGGGACCTAAAGGCATGGCCGTGCATTTCTAACCACCTCTTCCACTCCCACCACATCCAG
Seq C2 exon
GGGTCATGGATTCCTTCTTGGTGTTACACCAACTACGCTGCAACGGGGTCTTGGAGGGAATCCGGATCTGCCGCCAAGGGTTCCCCAACAGACTGCTGTATGCTGACTTCAGGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAACAAGCTCATGACCA
R:
CGCTGCCTGAAGTCAGCATAC
Band lengths:
202-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: