RnoINT0096558 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151139146-151139505:+
Coord C1 exon
chr3:151139146-151139233
Coord A exon
chr3:151139234-151139387
Coord C2 exon
chr3:151139388-151139505
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
3' ss Seq
TCCACTCCCACCACATCCAGGGG
3' ss Score
6.28
Exon sequences
Seq C1 exon
GAGAACCTCAACAAGCTTATGACCAACCTGCGGGCCACACAGCCCCACTTCGTCCGTTGTATCGTCCCCAACGAGAACAAGACTCCAG
Seq A exon
GTGGTGTCCCCGGGCCAGTGAGGATGGGGGAACCGGAAACATCTTAGGCTCTCACCTTGCAGGGTTTTCTCAGTCTCTAAGTAAGACCTGGGTAGGGACCTAAAGGCATGTCCGTACATTTCTAACCGCCTTCTTCCACTCCCACCACATCCAG
Seq C2 exon
GGGTCATGGATTCCTTCTTGGTGCTACACCAGCTACGCTGTAACGGGGTCCTAGAGGGGATCCGGATCTGCCGCCAAGGGTTCCCCAACAGACTGCTGTATGCTGACTTCAGGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAACAAGCTTATGACCAACC
R:
CGCTGCCTGAAGTCAGCATAC
Band lengths:
202-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]