GgaINT0010710 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2597585-2598229:-
Coord C1 exon
chr20:2598142-2598229
Coord A exon
chr20:2597703-2598141
Coord C2 exon
chr20:2597585-2597702
Length
439 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
GTCCCTACTCTCCCCCCTAGGAG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GAGAATCTTAACAAGCTGATGACCAACCTGCGCTCCACTCAGCCCCACTTTGTCCGCTGCATCATCCCCAATGAGACAAAGACCCCAG
Seq A exon
GTATGCATGGACTGAGACAGCACCCTGGCAACTCCTCCTGACAGGGACTCCTGCCCCACTCCTGTACCCACCTGCTACCCAGTCCTTTTCTCACAGCAGTTCTGCTGCTGCTGAGACCTGGCTCCATCTCTGCGGAAACCACTGCGACCCTTGCAAATCTCCTCTACTAGGGATGAAGTTTTGCCAGGCTCCCAGCTGGGCTGCATGCTGGCAGCTGGGCTGCCATGCACTTGTTTGACATCAGGCATAGATGAATTTTTCAGACTGACTTCTGTCCTCTTGGGCCTGGGCTGCAGCACTGGTGCTCAGTGTAGGCTTACAGAACAGCTCAACGCCTGTGCTCCCACAACAACCCCCATAGGCTGTTTGCAAAGTTCAGGCCATGCTTCCCCCATCCTCTTGGGCTGAGTATTTCCTCTGTCCCTACTCTCCCCCCTAG
Seq C2 exon
GAGCCATGGATGCCTTTCTGGTGCTGCACCAGCTGCGGTGTAACGGTGTCCTTGAAGGTATCCGCATCTGCCGTAAGGGATTTCCCAACAGGATCCTCTACGCAGACTTCAAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCTTAACAAGCTGATGACCA
R:
CGCTGCTTGAAGTCTGCGTAG
Band lengths:
206-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]